LOCUS WKY03226.1 1734 aa PRT INV 31-JUL-2023
DEFINITION Nippostrongylus brasiliensis hypothetical protein protein.
ACCESSION CP130735-51
PROTEIN_ID WKY03226.1
SOURCE Nippostrongylus brasiliensis
ORGANISM Nippostrongylus brasiliensis
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Strongyloidea; Heligmosomidae;
Nippostrongylus.
REFERENCE 1 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE A Nippostrongylus brasiliensis chromosomal reference genome and its
transcriptomics
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 50441521)
AUTHORS Schwarz,E.M., Baniya,A., Rodriguez,I.M., Lu,D., Bobardt,S.D.,
Anesko,K., Baker,L., Gouil,Q., Ritchie,M.E., Jex,A.R., Nair,M.G.
and Dillman,A.R.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2023) Molecular Biology and Genetics, Cornell
University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853,
USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: 03-JUN-2022
Assembly Method :: raven v. 1.7.0; sourmash v. MAR-2022;
racon v. 1.4.20; POLCA (in MaSuRCA) v.
4.0.8; 3d-dna v. 180419
Assembly Name :: Nippo_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 76.0x
Sequencing Technology :: Oxford Nanopore PromethION; Illumina
HiSeq; Omni-C
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Nippostrongylus brasiliensis"
/mol_type="genomic DNA"
/strain="MIMR"
/db_xref="taxon:27835"
/chromosome="IV"
/sex="pooled male and female"
/tissue_type="Whole animal"
/dev_stage="Adults"
/geo_loc_name="USA: Laboratory of Meera Nair, UC Riverside
School of Medicine, Riverside, CA"
/collection_date="2021/2022"
protein /locus_tag="Q1695_004738"
/note="NIPPO_CHRIV.G8578.T1"
intron_pos 2:0 (1/38)
intron_pos 79:1 (2/38)
intron_pos 98:0 (3/38)
intron_pos 122:1 (4/38)
intron_pos 163:2 (5/38)
intron_pos 200:1 (6/38)
intron_pos 241:0 (7/38)
intron_pos 318:2 (8/38)
intron_pos 374:2 (9/38)
intron_pos 418:1 (10/38)
intron_pos 460:2 (11/38)
intron_pos 527:0 (12/38)
intron_pos 615:2 (13/38)
intron_pos 664:0 (14/38)
intron_pos 714:0 (15/38)
intron_pos 745:0 (16/38)
intron_pos 791:2 (17/38)
intron_pos 842:2 (18/38)
intron_pos 889:0 (19/38)
intron_pos 947:1 (20/38)
intron_pos 1004:0 (21/38)
intron_pos 1057:0 (22/38)
intron_pos 1085:2 (23/38)
intron_pos 1160:1 (24/38)
intron_pos 1181:0 (25/38)
intron_pos 1211:0 (26/38)
intron_pos 1232:2 (27/38)
intron_pos 1274:0 (28/38)
intron_pos 1324:0 (29/38)
intron_pos 1377:0 (30/38)
intron_pos 1414:2 (31/38)
intron_pos 1457:2 (32/38)
intron_pos 1488:0 (33/38)
intron_pos 1551:0 (34/38)
intron_pos 1611:0 (35/38)
intron_pos 1645:2 (36/38)
intron_pos 1673:0 (37/38)
intron_pos 1730:2 (38/38)
BEGIN
1 MMFFRKKDKE EVPVIGAQKH KPPVPPKRTI VPSMISSPVP IAKNDDRPAT EPNDPIYDIP
61 KAKFALAGGD LDDDLVIKDD HLPPVRGFDS PKEFNIQGLA LPALAPVQVK VRTLTLHKGI
121 TGDFGFSIRR VQFPSSRRGG LKTVVFAEPS EVRTGPPRPD DVKNGLLPGD QLIKIDGKNV
181 DSMSRDELQN AVRSAGEQIV LEVKSVPELA EFCDRKNRQA GGRVDDDQLM LGHINTNLYE
241 DIPEEQRYWL IHKGGYTIVR LIELLPDGQA LVRVAAKDMT VDSTDIDRMN PTHLDRVGDV
301 AALRYLNETS TVHLLRQRFG CNLLHTNAGL MSLVCLTAIE EGAVGQDRLV SLFKGCRRGQ
361 MPAHIYATAQ QVYRNLQMTG HNQCVVLTGN SGSGKTTQLR NFVHYLAEVA GWTRSLPYEK
421 LARALGILEA FGHAAVSLHR DSTRFLHLFS LGFDKAAALR SARLQVSLLE ADRVVRRHSG
481 EASFHVFYYL WEGAEGTLRD RLQLDSIEQP AIHPYVKEED KTSAKEAWNR LLLALTELGF
541 SENQILAMSS VLAAILHIQA AGCTPGSAQR AHFLRVAHAQ QAAALLGVST EDLGNALFRG
601 KTANTAVASK VAGASRVALT SRGPDAPEAL VSFCAGLYQE LFYTIVELIN KALQSNAACT
661 WISILDYAGS SFHSDWMDGN VKRVLGLNDL VHNYINERVT ELFYNACFVE AQEVYSREQV
721 DIEMEMPLVS PCPLTRLLDQ RQQLLSCTDI DRRSEEKRGL FAILEEESMF PGATDESLLE
781 RIFVHLGDES RLIHRANRPM QFVLEHAMSC YPVTYDVAGW VKQAQPCESA GAARPLLVQS
841 KSPQLISLFA ASLPNESTKL RRATQAAQFE LSARRSISGF FANISGQIDY VFSSLRRGHR
901 SHFVHCIQPS PNMRSATGSY EAIDVPFVRS QLRSILLIDS IRANNRGYPE RVSFRDFRRR
961 FGCLVEDELN SSIDNALDDR AAVSKILESM DIHQHRYRLG ISQVLLAADV LCELEDRREL
1021 SLSGLVTAFQ RECRRHLASK WLQRRRVLET AIRCIQKNGK AYMKVREWPW WRLYTKVVPL
1081 LAATRSDPSH HECEVRIRQL EQQLHQLRVE KTQQQGRVEE LEQRLADEVQ TAHDLTQALD
1141 REGQTRVQLE RRLQQWREGV TEEERISRVS SSIRLESDEK TAELKTELVR VQQAEEQLRA
1201 KTQRAVAQLQ DVEAELNKVR SRNETLEKKQ QRFDADIHAV EEQLREAKEA KEKVEKERDE
1261 HQMTLTKKAG ELQELKTENS ELRTTVARLK REAEERSDAA AGGEQLVLLQ KAKRELENKL
1321 KEQEEELDDL AGTNQQLQQQ ITRLEMGAER LKADLSREST TKDTEIDEIR GQYQRRLRTL
1381 EDQLADLQDT NSSLVKENRV LEARARQYDL NTQSFEFSGE HYRRELRKAL ALLADTQTLL
1441 AHERESAPSQ SLLRQLRDQL EDAEAAKMSA LKGRHGLESE LNEVRVQLEQ ALVAKSAAED
1501 RALILLKEKN SGMALIEEKD EQYQQLMRKY KAAIQQTHLD HIAMADHIEQ IAELEKTKQK
1561 LTEQLNEETS NAAFQAQHTV EKHKLVLCEQ KARDLEAKLD LEIAQKQRLE SIVIKLRDEV
1621 DSLQEQINEA STSRDKESDV LRKARKENQQ LQETIEELQK RDLDSAHKKK ASRDEIDRLE
1681 ESNKALNAEL KLAFRRIESL QAALSEGLGD DESDMESDTE RALEDGVTTG INIL
//