LOCUS VTS03259.1 385 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana transcription termination factor rho
: Transcription termination factor Rho OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=rho PE=3 SV=1: Rho_RNA_bind: ATP-synt_ab protein.
ACCESSION LR593886-8349
PROTEIN_ID VTS03259.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_72430"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DNT4|L0DNT4_SINAD ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=Transcription
termination factor Rho OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=rho PE=3 SV=1 ; EVALUE=1e-157 ; Q/S_length_ratio=1.024"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A6CBM4|A6CBM4_9PLAN ;
ALN/Q_length_ratio=0.935 ; DESCRIPTION=Transcription
termination factor Rho OS=Planctomyces maris DSM 8797
GN=rho PE=3 SV=1 ; EVALUE=1e-144 ; Q/S_length_ratio=0.709"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|D2QWP2|D2QWP2_PIRSD ;
ALN/Q_length_ratio=0.935 ; DESCRIPTION=Transcription
termination factor Rho OS=Pirellula staleyi (strain ATCC
27377 / DSM 6068 / ICPB 4128) GN=rho PE=3 SV=1 ;
EVALUE=1e-143 ; Q/S_length_ratio=0.789"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D5SYT6|D5SYT6_PLAL2 ;
ALN/Q_length_ratio=0.935 ; DESCRIPTION=Transcription
termination factor Rho OS=Planctomyces limnophilus (strain
ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=rho PE=3 SV=1
; EVALUE=1e-140 ; Q/S_length_ratio=0.484"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A3ZQF8|A3ZQF8_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=Transcription
termination factor Rho OS=Blastopirellula marina DSM 3645
GN=rho PE=3 SV=1 ; EVALUE=1e-138 ; Q/S_length_ratio=0.867"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5RH41|M5RH41_9PLAN ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=Transcription
termination factor Rho OS=Rhodopirellula maiorica SM1
GN=rho PE=3 SV=1 ; EVALUE=1e-138 ; Q/S_length_ratio=0.921"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F0SFY6|F0SFY6_PLABD ;
ALN/Q_length_ratio=0.935 ; DESCRIPTION=Transcription
termination factor Rho OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=rho PE=3 SV=1 ; EVALUE=1e-136 ;
Q/S_length_ratio=0.729"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|F8C5B7|F8C5B7_THEGP ;
ALN/Q_length_ratio=0.945 ; DESCRIPTION=Transcription
termination factor Rho OS=Thermodesulfobacterium geofontis
(strain OPB45) GN=rho PE=3 SV=1 ; EVALUE=1e-132 ;
Q/S_length_ratio=0.863"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A7H9J7|A7H9J7_ANADF ;
ALN/Q_length_ratio=0.930 ; DESCRIPTION=Transcription
termination factor Rho OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=rho PE=3 SV=1 ; EVALUE=1e-131 ;
Q/S_length_ratio=1.058"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|F8ABC5|F8ABC5_THEID ;
ALN/Q_length_ratio=0.945 ; DESCRIPTION=Transcription
termination factor Rho OS=Thermodesulfatator indicus
(strain DSM 15286 / JCM 11887 / CIR29812) GN=rho PE=3 SV=1
; EVALUE=1e-131 ; Q/S_length_ratio=0.837"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5TDM9|M5TDM9_9PLAN ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=Transcription
termination factor Rho OS=Rhodopirellula sp. SWK7 GN=rho
PE=3 SV=1 ; EVALUE=1e-131 ; Q/S_length_ratio=0.854"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5UFL9|M5UFL9_9PLAN ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=Transcription
termination factor Rho OS=Rhodopirellula sallentina SM41
GN=rho PE=3 SV=1 ; EVALUE=1e-130 ; Q/S_length_ratio=0.871"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A075WTK4|A0A075WTK4_9BACT ;
ALN/Q_length_ratio=0.945 ; DESCRIPTION=Transcription
termination factor Rho OS=Thermodesulfobacterium commune
DSM 2178 GN=rho PE=3 SV=1 ; EVALUE=1e-129 ;
Q/S_length_ratio=0.923"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M2A5Z0|M2A5Z0_9PLAN ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=Transcription
termination factor Rho OS=Rhodopirellula europaea 6C
GN=rho PE=3 SV=1 ; EVALUE=1e-129 ; Q/S_length_ratio=0.873"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5SRM0|M5SRM0_9PLAN ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=Transcription
termination factor Rho OS=Rhodopirellula europaea SH398
GN=rho PE=3 SV=1 ; EVALUE=1e-129 ; Q/S_length_ratio=0.873"
/note="Pfam_scan:hit_1 (7..81);
Pfam:PF07497.7:Rho_RNA_bind;
Pfam_type:Domain;HMM_aln_Length:54; HMM_Length:78;
EVALUE:4.8e-11; BITSCORE: 42.1"
/note="Pfam_scan:hit_2 (109..329);
Pfam:PF00006.20:ATP-synt_ab;
Pfam_type:Family;HMM_aln_Length:211; HMM_Length:215;
EVALUE:4.2e-37; BITSCORE: 127.7"
/note="GO_domain:GO:0016887"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="Enzyme_Code:EC:3.6.1"
/note="Enzyme_Code:EC:3.6.1.3"
/note="Enzyme_Code:EC:3.6.1.15"
BEGIN
1 MSDPRNSALG VLEMHPRGHG FLRNPAKNYT PTPNDAYVPG PLINKLNLAE GVMLGGTLEP
61 PRRGSGPRLA TVTEIEGADP KLFRRRAWDE LTPVDPTKWL RLETGPEPLT TRVMDMFTPI
121 GMGQRGLIVA PPRSGKTVLL THIAQAVLAN HPNVHLMILL VDERPEEVTD IKRNIVRKAT
181 EGAPATPPPV EVIASSSDQN TANHTRLAEL VVERAKRLTE QGKDALVLLD SLTRLARAYN
241 KTAGSGRTMS GGVDSKALDV PKRLFGAARA FEEGGTLTIL GTALIETGSR MDEVIFQEFK
301 GTGNMELVLN RALAERRVYP AIDLGASGTR KEERLLSAEM LDQITLLRRS LMQQKPVEAM
361 EGLVTRLAKT KSNAEFLMQM GKMGR
//