LOCUS VTS03180.1 805 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_4264 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: PSCyt2: PSCyt2 protein.
ACCESSION LR593886-8323
PROTEIN_ID VTS03180.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_72690"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.337 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-49 ;
Q/S_length_ratio=1.899"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.320 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=1e-45 ;
Q/S_length_ratio=1.407"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.400 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=3e-43 ;
Q/S_length_ratio=1.616"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.311 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=4e-43 ;
Q/S_length_ratio=1.311"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.365 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=1e-41 ;
Q/S_length_ratio=1.670"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.363 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=1e-41 ;
Q/S_length_ratio=2.524"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.354 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=1.453"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.394 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=1.438"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.330 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=7e-41 ;
Q/S_length_ratio=1.328"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.324 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=1.604"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.345 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=7e-39 ;
Q/S_length_ratio=1.809"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.420 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=7e-39 ;
Q/S_length_ratio=1.607"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DHB1|L0DHB1_SINAD ;
ALN/Q_length_ratio=0.329 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4458 PE=4 SV=1 ; EVALUE=9e-39 ;
Q/S_length_ratio=0.826"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.316 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-38 ;
Q/S_length_ratio=0.901"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.375 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=3e-38 ;
Q/S_length_ratio=0.730"
/note="Pfam_scan:hit_1 (60..132);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:64; HMM_Length:71;
EVALUE:2.9e-09; BITSCORE: 36.3"
/note="Pfam_scan:hit_2 (154..207);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:3.8e-08; BITSCORE: 32.6"
/note="Pfam_scan:hit_3 (328..404); Pfam:PF07583.6:PSCyt2;
Pfam_type:Family;HMM_aln_Length:62; HMM_Length:209;
EVALUE:1.9e-07; BITSCORE: 30.8"
/note="Pfam_scan:hit_4 (549..631); Pfam:PF07583.6:PSCyt2;
Pfam_type:Family;HMM_aln_Length:66; HMM_Length:209;
EVALUE:1.6e-10; BITSCORE: 40.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPTGQAERLM PTLRRVVMAR QSAARTDGEL LSAFVQNAGA TEYPHEGARS PEAADAFAEL
61 VRRHGAMVLG VCRRVAGDYT TADDAFQATF LVLARRAASV RPRERVGSWL YGVAYRTALK
121 ARMVLARRRS REKQVDVMPE PTAPSAVPAW SDLQIVIDEE LARLPDKLRL PVVLCDLEGR
181 PQREVAKHLN VPAATLATRL ASARRTLAAR LTRRGVALSG GALAGLLEQH ASASAVPHTL
241 ATGVVRAVES GATQGALNSL VSAQAVHLSE GVIRMMMIAK LKAVAVLAAV ALALTTGLGV
301 GLVPAAAGDQ PATTNEPNAT KKAPVTTESV NEYVAERLKN IRAEEPSLDD PTFLRRLSLD
361 VRGTVPTDVE TWFFVSDGDE DKRAKVVEWI TDDDAKRAAI AKKLGVPIER VRVVRARLVT
421 DDVKGVDVSV AEVVDVPVVT TTKVIETLNF TPDGKKQVVS DEVKIVRGDK VVIEKDARVN
481 RAVVRVTDEK TAKKDDHLGV WSEAVVGSKP AKDTFFQSWT ATSGDKDVFL TWASDGKPSG
541 DKFTTTVDLF VATPDNTDAE FLKRVLTDVR GNGPTALELK YFTEDKDPKK REKLIDTLLK
601 DPAVQKKLGD EWKKKMLALK SSNQKSQVEF FYLVTPDHVI PEGKNQNRVV PLELTPAKPF
661 VVPLPPTTPK VPKPPAPSAK PFVVPDAPAV PAKPATPKTP AAPKTPQSDR LEKLVGELIA
721 AQKSDEAILE AITLATLSRL PTDAEKKLVL AVASTAGDRK TAWVAVARAL AGTDVKKVDV
781 IVPQFRVELV NPAAPPAPPV PPAKP
//