LOCUS VTS02894.1 564 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-8228
PROTEIN_ID VTS02894.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_73640"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.505 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=2e-46 ;
Q/S_length_ratio=0.919"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.535 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=3e-44 ;
Q/S_length_ratio=1.018"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.606 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=3e-44 ;
Q/S_length_ratio=0.945"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.832 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=4e-44 ;
Q/S_length_ratio=1.133"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.518 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=3e-41 ;
Q/S_length_ratio=1.768"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.775 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=4e-41 ;
Q/S_length_ratio=1.267"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.472 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=1.007"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.539 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=7e-40 ;
Q/S_length_ratio=0.512"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.528 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=1e-38 ;
Q/S_length_ratio=0.986"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.488 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-38 ;
Q/S_length_ratio=1.330"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.525 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.460"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.445 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=6e-36 ;
Q/S_length_ratio=1.170"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.560 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=3e-35 ;
Q/S_length_ratio=0.931"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.534 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=7e-35 ;
Q/S_length_ratio=0.916"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DE85|L0DE85_SINAD ;
ALN/Q_length_ratio=0.525 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3292 PE=4 SV=1 ; EVALUE=8e-35 ;
Q/S_length_ratio=1.076"
/note="Pfam_scan:hit_1 (48..117);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:68; HMM_Length:71;
EVALUE:1.2e-09; BITSCORE: 37.6"
/note="Pfam_scan:hit_2 (144..195);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:43; HMM_Length:54;
EVALUE:1.2e-08; BITSCORE: 34.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MAIAGSLMSQ KTLLHTLSTT LGLTDTAPDA ELLQRFAEVG DQTAFELVVR RHAELVWGVC
61 RAVLPGDTHT AEDAFQATFL VLARKAASIR DGSAAGWLFR VARNAAVRAR TRTARRTGEI
121 LPDALACTGA PVEEEVGRQE VAPVVAEEVN RLGSALREPV VLCFFEGHTH AEAANRLGWP
181 IGTVASRLAR AKDVLRDRLT RRGVALPAAG LAAVFASTSA PAVPLVRSAL AIATGPVNHV
241 SPTVLSLTHG VLSAMRFTKL KTIAALVTVA IGLTTALAAV PRHSGEPAAD ASPRSTSRPA
301 PVPKAPPNAK ELEAKDLKAL EGQWRAVKLN TEKELTETEL ASARFIFVGS DLTVRSTNEN
361 EHFKVALVPT ESPRGIDLTL KNDERSAGKV IHGIYELKGD ALTICIRHFA SEDQTRPTEF
421 KPEQGSLLFV LERVKDEKEE LKALAGEWKG VSINSSGKEL PKAEAEGGKW TIKGAEITVT
481 SEGDPEGKMT IKLDPHATPP TIDLTVTVGV GDEKGNVLKG IYFRQGDKLT ICFTDLKKKD
541 SVRPTELKPG AGVALVVFER APKK
//