LOCUS VTS02843.1 215 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana dna-directed rna polymerase subunit
sigma24 : DNA-directed RNA polymerase specialized sigma
subunit, sigma24 OS=Singulisphaera acidiphila (strain
ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_5214
PE=4 SV=1: Sigma70_ECF protein.
ACCESSION LR593886-8211
PROTEIN_ID VTS02843.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_73810"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DL45|L0DL45_SINAD ;
ALN/Q_length_ratio=0.907 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_5214 PE=4 SV=1 ;
EVALUE=1e-39 ; Q/S_length_ratio=1.103"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D7L1|L0D7L1_SINAD ;
ALN/Q_length_ratio=0.879 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_0411 PE=4 SV=1 ;
EVALUE=4e-27 ; Q/S_length_ratio=1.091"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A3ZN77|A3ZN77_9PLAN ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_16495 PE=4 SV=1 ; EVALUE=9e-22 ;
Q/S_length_ratio=1.097"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L7C780|L7C780_RHOBT ;
ALN/Q_length_ratio=0.874 ; DESCRIPTION=Protein containing
RNA polymerase sigma-70 domain protein OS=Rhodopirellula
baltica SWK14 GN=RBSWK_06137 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=1.114"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|K5DKJ3|K5DKJ3_RHOBT ;
ALN/Q_length_ratio=0.874 ; DESCRIPTION=Protein containing
RNA polymerase sigma-70 domain protein OS=Rhodopirellula
baltica SH28 GN=RBSH_01266 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=1.114"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F2AQS5|F2AQS5_RHOBT ;
ALN/Q_length_ratio=0.874 ; DESCRIPTION=Protein containing
RNA polymerase sigma-70 domain OS=Rhodopirellula baltica
WH47 GN=RBWH47_01434 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=1.114"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|E8R0Z6|E8R0Z6_ISOPI ;
ALN/Q_length_ratio=0.577 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Isosphaera pallida
(strain ATCC 43644 / DSM 9630 / IS1B) GN=Isop_2781 PE=4
SV=1 ; EVALUE=4e-13 ; Q/S_length_ratio=0.752"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5T780|M5T780_9PLAN ;
ALN/Q_length_ratio=0.674 ; DESCRIPTION=ECF subfamily RNA
polymerase sigma-24 factor OS=Rhodopirellula sp. SWK7
GN=RRSWK_02585 PE=4 SV=1 ; EVALUE=7e-11 ;
Q/S_length_ratio=1.108"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0D8T7|L0D8T7_SINAD ;
ALN/Q_length_ratio=0.851 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0873 PE=4 SV=1 ; EVALUE=1e-10 ;
Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A090KMS8|A0A090KMS8_9BACT ;
ALN/Q_length_ratio=0.884 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D2QXR8|D2QXR8_PIRSD ;
ALN/Q_length_ratio=0.809 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_3331
PE=4 SV=1 ; EVALUE=2e-08 ; Q/S_length_ratio=1.138"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DQ63|L0DQ63_SINAD ;
ALN/Q_length_ratio=0.781 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_7480 PE=4 SV=1 ;
EVALUE=4e-07 ; Q/S_length_ratio=1.097"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A6C775|A6C775_9PLAN ;
ALN/Q_length_ratio=0.884 ; DESCRIPTION=Serine/threonine
protein kinase OS=Planctomyces maris DSM 8797
GN=PM8797T_04305 PE=4 SV=1 ; EVALUE=8e-07 ;
Q/S_length_ratio=0.458"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5U100|M5U100_9PLAN ;
ALN/Q_length_ratio=0.916 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_03451 PE=4 SV=1 ; EVALUE=3e-06 ;
Q/S_length_ratio=0.863"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DCU8|L0DCU8_SINAD ;
ALN/Q_length_ratio=0.823 ; DESCRIPTION=DNA-directed RNA
polymerase specialized sigma subunit, sigma24
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_2383 PE=4 SV=1 ;
EVALUE=3e-06 ; Q/S_length_ratio=1.091"
/note="Pfam_scan:hit_1 (4..191);
Pfam:PF07638.6:Sigma70_ECF;
Pfam_type:Family;HMM_aln_Length:104; HMM_Length:185;
EVALUE:2.5e-06; BITSCORE: 27.3"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MNSTASFREL LHRVRVGDQE AARELVTAFE PKVRHSVRGR LTEMRLRHVL DSGDVCQTVL
61 ANFFTRAEDG QFSFATPEDL LRLLVTMARN NVLDEARKNR AGRRDRRRVV NDSDHCLSGV
121 FATDPTPSRI VADRDLAEYT YLRLATDERY LLEQRVAGRE WADLAAEQNT TPGALRKKLS
181 RAVRRVTAEL FPDATADGDD EPLNHLSGAG SSLGR
//