LOCUS VTS02619.1 183 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase subunit sigma-24 : RNA
polymerase subunit sigma-24 OS=Anditalea andensis GN=EL17_12010
PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-8136
PROTEIN_ID VTS02619.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_74560"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A074LIM8|A0A074LIM8_9BACT ;
ALN/Q_length_ratio=0.962 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Anditalea andensis GN=EL17_12010 PE=4
SV=1 ; EVALUE=1e-26 ; Q/S_length_ratio=0.915"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A0A098LW17|A0A098LW17_9FLAO ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Jejuia pallidilutea GN=JCM19538_367
PE=4 SV=1 ; EVALUE=2e-25 ; Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A090W133|A0A090W133_9FLAO ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Jejuia pallidilutea GN=JCM19301_2188
PE=4 SV=1 ; EVALUE=2e-25 ; Q/S_length_ratio=0.901"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|K1M3G4|K1M3G4_9BACT ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=Sigma-K factor
OS=Cecembia lonarensis LW9 GN=sigK PE=4 SV=1 ;
EVALUE=5e-25 ; Q/S_length_ratio=0.915"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M7X694|M7X694_9BACT ;
ALN/Q_length_ratio=1.011 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily OS=Mariniradius
saccharolyticus AK6 GN=C943_00957 PE=4 SV=1 ; EVALUE=5e-25
; Q/S_length_ratio=0.915"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A3XIR4|A3XIR4_LEEBM ;
ALN/Q_length_ratio=1.005 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily protein OS=Leeuwenhoekiella
blandensis (strain CECT 7118 / CCUG 51940 / MED217)
GN=MED217_06002 PE=4 SV=1 ; EVALUE=5e-25 ;
Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|T2KL28|T2KL28_9FLAO ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase
sigma-70 factor, ECF subfamily OS=Formosa agariphila KMM
3901 GN=BN863_14290 PE=4 SV=1 ; EVALUE=7e-25 ;
Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|H2BQX2|H2BQX2_9FLAO ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase,
sigma subunit, ECF family OS=Gillisia limnaea DSM 15749
GN=Gilli_0133 PE=4 SV=1 ; EVALUE=7e-25 ;
Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|W2US79|W2US79_9FLAO ;
ALN/Q_length_ratio=0.978 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Zhouia amylolytica AD3
GN=P278_08320 PE=4 SV=1 ; EVALUE=9e-25 ;
Q/S_length_ratio=0.948"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A084THW0|A0A084THW0_9FLAO ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Mangrovimonas yunxiaonensis
GN=IA57_11440 PE=4 SV=1 ; EVALUE=1e-24 ;
Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|G8R229|G8R229_OWEHD ;
ALN/Q_length_ratio=1.038 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Owenweeksia hongkongensis
(strain DSM 17368 / JCM 12287 / NRRL B-23963)
GN=Oweho_0766 PE=4 SV=1 ; EVALUE=2e-24 ;
Q/S_length_ratio=0.938"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A099Y3P8|A0A099Y3P8_9FLAO ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Polaribacter sp. Hel1_85 GN=PHEL85_0244
PE=4 SV=1 ; EVALUE=2e-24 ; Q/S_length_ratio=0.938"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A090WLV8|A0A090WLV8_9FLAO ;
ALN/Q_length_ratio=1.005 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Algibacter lectus GN=JCM19274_4911 PE=4
SV=1 ; EVALUE=3e-24 ; Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A085EEQ8|A0A085EEQ8_9FLAO ;
ALN/Q_length_ratio=0.984 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Flavobacterium sp. EM1308
GN=FEM08_35330 PE=4 SV=1 ; EVALUE=3e-24 ;
Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A6C7E3|A6C7E3_9PLAN ;
ALN/Q_length_ratio=0.891 ; DESCRIPTION=Sigma-70 region 2
OS=Planctomyces maris DSM 8797 GN=PM8797T_29313 PE=4 SV=1
; EVALUE=3e-24 ; Q/S_length_ratio=1.052"
/note="Pfam_scan:hit_1 (26..93);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:2.6e-11; BITSCORE: 42.9"
/note="Pfam_scan:hit_2 (121..174);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:1.6e-11; BITSCORE: 43.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTITDSTDAE LLARFRAGDS AALEPLFARY EEPVFRFLFG VLKDHHAAED ALQETFVQAL
61 RKADTVAADT FRGWLFTVAY RQAMLLKRKT KRLPTQTDDF ALLGLIGDDP ADLRAGATDD
121 ARQVRALLDQ LPETQRAVIS ARVFDGKTFR EVAAALGCPL NTALARMHDG LKKLRQLWEA
181 RHA
//