LOCUS VTS02517.1 132 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana Putative virulence-associated protein
D OS=Synechococcus sp. (strain ATCC 27167 / PCC 6312)
GN=Syn6312_1748 PE=4 SV=1: CRISPR_Cas2 protein.
ACCESSION LR593886-8102
PROTEIN_ID VTS02517.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_74900"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|K9RUY4|K9RUY4_SYNP3 ;
ALN/Q_length_ratio=0.720 ; DESCRIPTION=Putative
virulence-associated protein D OS=Synechococcus sp.
(strain ATCC 27167 / PCC 6312) GN=Syn6312_1748 PE=4 SV=1 ;
EVALUE=6e-41 ; Q/S_length_ratio=1.039"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D2R175|D2R175_PIRSD ;
ALN/Q_length_ratio=0.720 ;
DESCRIPTION=Virulence-associated protein D (VapD)
conserved region OS=Pirellula staleyi (strain ATCC 27377 /
DSM 6068 / ICPB 4128) GN=Psta_3906 PE=4 SV=1 ;
EVALUE=3e-30 ; Q/S_length_ratio=1.333"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A097H0U2|A0A097H0U2_9PSED ;
ALN/Q_length_ratio=0.705 ; DESCRIPTION=Putative
virulence-associated protein D OS=Pseudomonas sp. ZM1 PE=4
SV=1 ; EVALUE=3e-29 ; Q/S_length_ratio=1.389"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A0A030UI96|A0A030UI96_PSEAI ;
ALN/Q_length_ratio=0.705 ; DESCRIPTION=Uncharacterized
protein OS=Pseudomonas aeruginosa 3579 GN=AJ66_06264 PE=4
SV=1 ; EVALUE=8e-29 ; Q/S_length_ratio=1.419"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A0A030VBK7|A0A030VBK7_PSEAI ;
ALN/Q_length_ratio=0.705 ; DESCRIPTION=Uncharacterized
protein OS=Pseudomonas aeruginosa 3578 GN=AJ65_06292 PE=4
SV=1 ; EVALUE=8e-29 ; Q/S_length_ratio=1.419"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|D4MAY0|D4MAY0_9BACT ;
ALN/Q_length_ratio=0.720 ; DESCRIPTION=Uncharacterized
virulence-associated protein D OS=Fretibacterium
fastidiosum GN=SY1_23870 PE=4 SV=1 ; EVALUE=2e-26 ;
Q/S_length_ratio=1.375"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|Q215J5|Q215J5_RHOPB ;
ALN/Q_length_ratio=0.705 ;
DESCRIPTION=Virulence-associated protein D
OS=Rhodopseudomonas palustris (strain BisB18) GN=RPC_2389
PE=4 SV=1 ; EVALUE=3e-26 ; Q/S_length_ratio=1.222"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|I6ZMG7|I6ZMG7_9BACT ;
ALN/Q_length_ratio=0.705 ; DESCRIPTION=Putative
virulence-associated protein D OS=uncultured bacterium
GN=vapD PE=4 SV=1 ; EVALUE=4e-26 ; Q/S_length_ratio=1.404"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|T1UBH5|T1UBH5_HELPX ;
ALN/Q_length_ratio=0.712 ; DESCRIPTION=CRISPR associated
Cas2 family protein OS=Helicobacter pylori SouthAfrica20
GN=HPSA20_1028 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=1.389"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|N2PCF5|N2PCF5_ECOLX ;
ALN/Q_length_ratio=0.705 ; DESCRIPTION=CRISPR associated
Cas2 family protein OS=Escherichia coli 2864350
GN=EC2864350_1329 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=1.419"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M8WN19|M8WN19_ECOLX ;
ALN/Q_length_ratio=0.705 ; DESCRIPTION=CRISPR associated
Cas2 family protein OS=Escherichia coli 2865200
GN=EC2865200_1754 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=1.419"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|T2S7N1|T2S7N1_HELPX ;
ALN/Q_length_ratio=0.712 ; DESCRIPTION=CRISPR associated
Cas2 family protein OS=Helicobacter pylori SouthAfrica50
GN=HPSA50_0756 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=1.389"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|N2T194|N2T194_ECOLX ;
ALN/Q_length_ratio=0.705 ; DESCRIPTION=CRISPR associated
Cas2 family protein OS=Escherichia coli MP021561.3
GN=ECMP0215613_1376 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=1.419"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5CJ68|M5CJ68_STEMA ;
ALN/Q_length_ratio=0.788 ;
DESCRIPTION=Virulence-associated protein 2
OS=Stenotrophomonas maltophilia SKK35 GN=vapD PE=4 SV=1 ;
EVALUE=3e-25 ; Q/S_length_ratio=1.073"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A6DE23|A6DE23_9PROT ;
ALN/Q_length_ratio=0.727 ; DESCRIPTION=Virulence
associated protein D (VapD) OS=Caminibacter mediatlanticus
TB-2 GN=CMTB2_04562 PE=4 SV=1 ; EVALUE=4e-25 ;
Q/S_length_ratio=1.375"
/note="Pfam_scan:hit_1 (27..120);
Pfam:PF09827.4:CRISPR_Cas2;
Pfam_type:Family;HMM_aln_Length:67; HMM_Length:78;
EVALUE:4.5e-06; BITSCORE: 26.7"
BEGIN
1 MTIAVARDTR AGLLRHGLPA SFKREGTVYA IAFDMDIEQL RIHFGDPYNN AYLEIRRVLE
61 RHQFQWQQGS MYFGGPTVTA ATVMVAVIDL ATQLPWFAAS VRDVRMLRIE ELNDLMPVVQ
121 RVAGMTNGEQ ET
//