LOCUS VTS02430.1 209 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-e rhodopirellula
baltica : RNA polymerase sigma-70 factor, Planctomycetaceae-
specific subfamily 1 OS=Singulisphaera acidiphila (strain
ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_2102
PE=4 SV=1: Sigma70_ECF protein.
ACCESSION LR593886-8073
PROTEIN_ID VTS02430.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_75190"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DB31|L0DB31_SINAD ;
ALN/Q_length_ratio=0.971 ; DESCRIPTION=RNA polymerase
sigma-70 factor, Planctomycetaceae-specific subfamily 1
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_2102 PE=4 SV=1 ;
EVALUE=7e-69 ; Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DFY4|L0DFY4_SINAD ;
ALN/Q_length_ratio=0.981 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3944 PE=4 SV=1 ; EVALUE=4e-62 ;
Q/S_length_ratio=0.959"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A6CBF0|A6CBF0_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=Probable RNA
polymerase sigma factor cnrH OS=Planctomyces maris DSM
8797 GN=PM8797T_15646 PE=4 SV=1 ; EVALUE=3e-58 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DND2|L0DND2_SINAD ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6693 PE=4 SV=1 ; EVALUE=4e-56 ;
Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SK73|F0SK73_PLABD ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_2198 PE=4 SV=1 ;
EVALUE=2e-47 ; Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5TD35|M5TD35_9PLAN ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula sp. SWK7
GN=RRSWK_00700 PE=4 SV=1 ; EVALUE=2e-46 ;
Q/S_length_ratio=1.035"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5RUR2|M5RUR2_9PLAN ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=RNA polymerase
sigma factor cnrH OS=Rhodopirellula maiorica SM1
GN=RMSM_00130 PE=4 SV=1 ; EVALUE=2e-43 ;
Q/S_length_ratio=1.050"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q7UKZ0|Q7UKZ0_RHOBA ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=Probable RNA
polymerase sigma factor cnrH OS=Rhodopirellula baltica
(strain SH1) GN=cnrH PE=4 SV=1 ; EVALUE=6e-38 ;
Q/S_length_ratio=0.937"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L7C7W0|L7C7W0_RHOBT ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica SWK14 GN=RBSWK_05957 PE=4 SV=1 ; EVALUE=7e-38 ;
Q/S_length_ratio=0.937"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5SB21|M5SB21_9PLAN ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
europaea SH398 GN=RESH_00604 PE=4 SV=1 ; EVALUE=8e-38 ;
Q/S_length_ratio=0.946"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M2B794|M2B794_9PLAN ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
europaea 6C GN=RE6C_01156 PE=4 SV=1 ; EVALUE=8e-38 ;
Q/S_length_ratio=0.946"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|F2AWE2|F2AWE2_RHOBT ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica WH47 GN=RBWH47_01220 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.937"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|K5CZL2|K5CZL2_RHOBT ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica SH28 GN=RBSH_05048 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=0.937"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5SZV8|M5SZV8_9PLAN ;
ALN/Q_length_ratio=0.933 ; DESCRIPTION=RNA polymerase
sigma factor cnrH OS=Rhodopirellula sp. SWK7
GN=RRSWK_04976 PE=4 SV=1 ; EVALUE=5e-37 ;
Q/S_length_ratio=0.968"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5TVJ2|M5TVJ2_9PLAN ;
ALN/Q_length_ratio=0.751 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula
sallentina SM41 GN=RSSM_05360 PE=4 SV=1 ; EVALUE=8e-37 ;
Q/S_length_ratio=1.331"
/note="Pfam_scan:hit_1 (6..203);
Pfam:PF07638.6:Sigma70_ECF;
Pfam_type:Family;HMM_aln_Length:176; HMM_Length:185;
EVALUE:1.2e-16; BITSCORE: 60.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MAVEAEVEIA ELLTKVRAGD QQALAELFAR HRNKLRRMVQ LRLDHRLAGR VSPSDVLQEA
61 YIDALKRVDH YFEKPDQPFF GWLRLIVGQR LADVHREHLA QKRDVGQEVS INRGGPTTDS
121 ACLAACLLGN GSSPSHAAAR TEAFTHLEEA LNSMDALDRE VLALRHFEEL SNTETAALLG
181 VQPAAASKRY VRALARLKQI LETIPGFGG
//