LOCUS VTS02019.1 198 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma factor : RNA polymerase
sigma-H factor OS=SAR86 cluster bacterium SAR86B GN=algU
PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-7936
PROTEIN_ID VTS02019.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_76560"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|J4V1K1|J4V1K1_9GAMM ;
ALN/Q_length_ratio=0.924 ; DESCRIPTION=RNA polymerase
sigma-H factor OS=SAR86 cluster bacterium SAR86B GN=algU
PE=4 SV=1 ; EVALUE=1e-30 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D7CPT8|D7CPT8_SYNLT ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase
sigma factor OS=Syntrophothermus lipocalidus (strain DSM
12680 / TGB-C1) GN=Slip_1965 PE=3 SV=1 ; EVALUE=1e-29 ;
Q/S_length_ratio=1.026"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|C5D3V9|C5D3V9_GEOSW ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Geobacillus sp. (strain
WCH70) GN=GWCH70_0154 PE=4 SV=1 ; EVALUE=1e-28 ;
Q/S_length_ratio=1.082"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|E3I9K5|E3I9K5_GEOS0 ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Geobacillus sp. (strain
Y4.1MC1) GN=GY4MC1_0153 PE=4 SV=1 ; EVALUE=4e-28 ;
Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|I0U303|I0U303_GEOTM ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Geobacillus
thermoglucosidans TNO-09.020 GN=sigW PE=4 SV=1 ;
EVALUE=4e-28 ; Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A023DSD2|A0A023DSD2_GEOTM ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=Putative RNA
polymerase ECF-type sigma factor OS=Geobacillus
thermoglucosidasius NBRC 107763 GN=GT2_14_01250 PE=4 SV=1
; EVALUE=4e-28 ; Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A0A023CTR9|A0A023CTR9_GEOSE ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase
sigma factor SigW OS=Geobacillus stearothermophilus
NUB3621 GN=H839_00370 PE=4 SV=1 ; EVALUE=4e-28 ;
Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F8CVR4|F8CVR4_GEOTC ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Geobacillus
thermoglucosidasius (strain C56-YS93) GN=Geoth_0173 PE=4
SV=1 ; EVALUE=4e-28 ; Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|D1CIE7|D1CIE7_THET1 ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Thermobaculum terrenum
(strain ATCC BAA-798 / YNP1) GN=Tter_2630 PE=4 SV=1 ;
EVALUE=2e-27 ; Q/S_length_ratio=1.065"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A023DF25|A0A023DF25_9BACI ;
ALN/Q_length_ratio=0.894 ; DESCRIPTION=RNA polymerase
sigma factor OS=Geobacillus caldoxylosilyticus NBRC 107762
GN=GCA01S_029_00250 PE=3 SV=1 ; EVALUE=4e-27 ;
Q/S_length_ratio=1.059"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|G4CPM1|G4CPM1_9NEIS ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=DNA-directed RNA
polymerase sigma subunit RpoE OS=Neisseria wadsworthii
9715 GN=rpoE2 PE=4 SV=1 ; EVALUE=5e-27 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|E5UJE6|E5UJE6_NEIMU ;
ALN/Q_length_ratio=0.899 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Neisseria mucosa C102
GN=HMPREF0604_00738 PE=4 SV=1 ; EVALUE=6e-27 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|C5TJH6|C5TJH6_NEIFL ;
ALN/Q_length_ratio=0.899 ; DESCRIPTION=RNA polymerase
sigma factor RpoE OS=Neisseria flavescens SK114 GN=rpoE
PE=4 SV=1 ; EVALUE=8e-27 ; Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|B6BUK2|B6BUK2_9PROT ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=RNA polymerase
sigma factor OS=beta proteobacterium KB13 GN=rpoE PE=3
SV=1 ; EVALUE=8e-27 ; Q/S_length_ratio=0.865"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|D3A4C1|D3A4C1_NEISU ;
ALN/Q_length_ratio=0.899 ; DESCRIPTION=RNA polymerase
sigma factor RpoE OS=Neisseria subflava NJ9703 GN=rpoE
PE=4 SV=1 ; EVALUE=9e-27 ; Q/S_length_ratio=0.995"
/note="Pfam_scan:hit_1 (31..99);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:2.1e-17; BITSCORE: 62.4"
/note="Pfam_scan:hit_2 (125..178);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:9.7e-10; BITSCORE: 37.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTREPEPPLP DEEAEWIRAA QTGDRSAFAR LIDCYWDRLY RWLYHLTRDR HTAEDLTQET
61 FLRALAAVKS FRPGSNFRAW VFRIGHNNFV NQKRAERRTK HQLPEDSAAP GEGSVEANTE
121 NREVLEVVSQ AVADLPSDFR SAILLRVHEG LSFREIAKVL NTTEETARWR VFKARQKLMK
181 VLSPELLPPG AVSEEAKE
//