LOCUS VTS01786.1 201 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma-24 ecf subfamily : Uncharacterized
protein OS=Sorangium cellulosum So0157-2 GN=SCE1572_05510
PE=4 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-7859
PROTEIN_ID VTS01786.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_77330"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|S4XQB3|S4XQB3_SORCE ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=Uncharacterized
protein OS=Sorangium cellulosum So0157-2 GN=SCE1572_05510
PE=4 SV=1 ; EVALUE=4e-72 ; Q/S_length_ratio=0.944"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5U3T6|M5U3T6_9PLAN ;
ALN/Q_length_ratio=0.970 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula
sallentina SM41 GN=RSSM_02638 PE=4 SV=1 ; EVALUE=4e-38 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5TCM2|M5TCM2_9PLAN ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_00516 PE=4 SV=1 ; EVALUE=5e-38 ;
Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0SFR9|F0SFR9_PLABD ;
ALN/Q_length_ratio=0.945 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_3949 PE=4 SV=1 ;
EVALUE=4e-36 ; Q/S_length_ratio=0.878"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|H5SKQ4|H5SKQ4_9ZZZZ ;
ALN/Q_length_ratio=1.020 ; DESCRIPTION=Hypothetical
conserved protein OS=uncultured prokaryote
GN=HGMM_F42G03C03 PE=4 SV=1 ; EVALUE=2e-29 ;
Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|J7Q4Q8|J7Q4Q8_METSZ ;
ALN/Q_length_ratio=0.756 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Methylocystis sp.
(strain SC2) GN=BN69_2328 PE=4 SV=1 ; EVALUE=2e-29 ;
Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|I4EBB7|I4EBB7_METSZ ;
ALN/Q_length_ratio=1.040 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Methylocystis sp.
(strain SC2) GN=SC2p2_01170 PE=4 SV=1 ; EVALUE=2e-28 ;
Q/S_length_ratio=0.866"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|R4YX64|R4YX64_9ACTN ;
ALN/Q_length_ratio=0.741 ; DESCRIPTION=Sigma-24
(FecI-like) OS=Candidatus Microthrix parvicella RN1
GN=BN381_150032 PE=4 SV=1 ; EVALUE=1e-17 ;
Q/S_length_ratio=0.885"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A1T5I4|A1T5I4_MYCVP ;
ALN/Q_length_ratio=0.925 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_1605 PE=4
SV=1 ; EVALUE=3e-15 ; Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A097MI84|A0A097MI84_MYCSM ;
ALN/Q_length_ratio=0.935 ; DESCRIPTION=RNA polymerase
sigma 70 OS=Mycobacterium smegmatis GN=LI98_33035 PE=4
SV=1 ; EVALUE=5e-15 ; Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0R6V2|A0R6V2_MYCS2 ;
ALN/Q_length_ratio=0.935 ; DESCRIPTION=RNA polymerase
sigma 70 OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=MSMEG_6682 PE=4 SV=1 ; EVALUE=5e-15 ;
Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|N1V705|N1V705_9MICC ;
ALN/Q_length_ratio=0.905 ; DESCRIPTION=Sigma-24
(FecI-like) protein OS=Arthrobacter crystallopoietes
BAB-32 GN=D477_001714 PE=4 SV=1 ; EVALUE=6e-15 ;
Q/S_length_ratio=0.914"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L8F0Z7|L8F0Z7_MYCSM ;
ALN/Q_length_ratio=0.935 ; DESCRIPTION=RNA polymerase
sigma-70 factor, putative OS=Mycobacterium smegmatis MKD8
GN=D806_6745 PE=4 SV=1 ; EVALUE=8e-15 ;
Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A0A0JX88|A0A0A0JX88_9MICO ;
ALN/Q_length_ratio=0.970 ; DESCRIPTION=Uncharacterized
protein OS=Knoellia aerolata DSM 18566 GN=N801_04605 PE=4
SV=1 ; EVALUE=9e-14 ; Q/S_length_ratio=0.834"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|U5EEH6|U5EEH6_NOCAS ;
ALN/Q_length_ratio=0.846 ; DESCRIPTION=Putative RNA
polymerase ECF-type sigma factor OS=Nocardia asteroides
NBRC 15531 GN=NCAST_25_02230 PE=4 SV=1 ; EVALUE=2e-12 ;
Q/S_length_ratio=0.922"
/note="Pfam_scan:hit_1 (26..95);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:63; HMM_Length:71;
EVALUE:4.2e-11; BITSCORE: 42.2"
/note="Pfam_scan:hit_2 (135..181);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:43; HMM_Length:54;
EVALUE:3.7e-06; BITSCORE: 26.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTERINEDWL QSLGGTTIDE VAVAELREVL RRGLCRALAG RVAADDGFIE DVTQEGTVKV
61 LGGLATFRGD SRFTTWAVTI AVRVAFTELR RARWRDVSLD RLVEDAPTRT PAAPPDDAPS
121 TDARQVVLAE MHRVIETGLT DRQRQALVAE FKGMPQAEIA AQMGLTRNGL YKLTHDARQN
181 LKRGLEAAGI NGDEVREAFD L
//