LOCUS VTS00969.1 278 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana integrase-recombinase protein : Site-
specific recombinase XerD OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4560 PE=4 SV=1: Phage_integrase protein.
ACCESSION LR593886-7586
PROTEIN_ID VTS00969.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_80060"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DJ84|L0DJ84_SINAD ;
ALN/Q_length_ratio=0.892 ; DESCRIPTION=Site-specific
recombinase XerD OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4560
PE=4 SV=1 ; EVALUE=2e-22 ; Q/S_length_ratio=0.718"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5TYC8|M5TYC8_9PLAN ;
ALN/Q_length_ratio=0.777 ;
DESCRIPTION=Integrase-recombinase protein
OS=Rhodopirellula sallentina SM41 GN=RSSM_04495 PE=4 SV=1
; EVALUE=4e-20 ; Q/S_length_ratio=0.662"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|X1LRV7|X1LRV7_9ZZZZ ;
ALN/Q_length_ratio=0.676 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S06H3_L02821 (Fragment) OS=marine
sediment metagenome GN=S06H3_17168 PE=4 SV=1 ;
EVALUE=1e-15 ; Q/S_length_ratio=1.018"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5TZQ5|M5TZQ5_9PLAN ;
ALN/Q_length_ratio=0.989 ;
DESCRIPTION=Integrase-recombinase protein
OS=Rhodopirellula sallentina SM41 GN=RSSM_03803 PE=4 SV=1
; EVALUE=6e-13 ; Q/S_length_ratio=0.540"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M2AG18|M2AG18_9PLAN ;
ALN/Q_length_ratio=1.036 ; DESCRIPTION=Site-specific
recombinase, phage integrase family protein (Fragment)
OS=Rhodopirellula europaea 6C GN=RE6C_03211 PE=4 SV=1 ;
EVALUE=4e-12 ; Q/S_length_ratio=0.659"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|B5JL57|B5JL57_9BACT ;
ALN/Q_length_ratio=0.784 ; DESCRIPTION=Site-specific
recombinase, phage integrase family protein
OS=Verrucomicrobiae bacterium DG1235 GN=VDG1235_705 PE=4
SV=1 ; EVALUE=5e-11 ; Q/S_length_ratio=0.650"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|T1AFH7|T1AFH7_9ZZZZ ;
ALN/Q_length_ratio=0.453 ;
DESCRIPTION=Integrase-recombinase protein (Fragment)
OS=mine drainage metagenome GN=B1A_11743 PE=4 SV=1 ;
EVALUE=8e-11 ; Q/S_length_ratio=1.571"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M2AY01|M2AY01_9PLAN ;
ALN/Q_length_ratio=0.917 ; DESCRIPTION=Transcriptional
regulator OS=Rhodopirellula europaea 6C GN=RE6C_01643 PE=4
SV=1 ; EVALUE=3e-09 ; Q/S_length_ratio=0.383"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|X1W0L9|X1W0L9_9ZZZZ ;
ALN/Q_length_ratio=0.399 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S12H4_S21053 (Fragment) OS=marine
sediment metagenome GN=S12H4_55283 PE=4 SV=1 ;
EVALUE=1e-08 ; Q/S_length_ratio=1.426"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5SAG3|M5SAG3_9PLAN ;
ALN/Q_length_ratio=0.626 ;
DESCRIPTION=Integrase-recombinase protein
OS=Rhodopirellula europaea SH398 GN=RESH_00956 PE=4 SV=1 ;
EVALUE=1e-08 ; Q/S_length_ratio=0.598"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|X0XHQ9|X0XHQ9_9ZZZZ ;
ALN/Q_length_ratio=0.511 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_S28344 (Fragment) OS=marine
sediment metagenome GN=S01H1_65329 PE=4 SV=1 ;
EVALUE=3e-08 ; Q/S_length_ratio=1.108"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5SU81|M5SU81_9PLAN ;
ALN/Q_length_ratio=0.791 ; DESCRIPTION=Tyrosine
recombinase XerD OS=Rhodopirellula sp. SWK7 GN=RRSWK_06961
PE=4 SV=1 ; EVALUE=2e-07 ; Q/S_length_ratio=0.606"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|Q7UJ13|Q7UJ13_RHOBA ;
ALN/Q_length_ratio=0.986 ; DESCRIPTION=Probable
integrase-recombinase protein OS=Rhodopirellula baltica
(strain SH1) GN=RB12202 PE=4 SV=1 ; EVALUE=4e-07 ;
Q/S_length_ratio=0.514"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5TSZ5|M5TSZ5_9PLAN ;
ALN/Q_length_ratio=1.036 ; DESCRIPTION=Site-specific
recombinase, phage integrase family protein
OS=Rhodopirellula sallentina SM41 GN=RSSM_06380 PE=4 SV=1
; EVALUE=4e-07 ; Q/S_length_ratio=0.525"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L7CAI7|L7CAI7_RHOBT ;
ALN/Q_length_ratio=1.011 ;
DESCRIPTION=Integrase-recombinase protein
OS=Rhodopirellula baltica SWK14 GN=RBSWK_05106 PE=4 SV=1 ;
EVALUE=7e-07 ; Q/S_length_ratio=0.490"
/note="Pfam_scan:hit_1 (109..252);
Pfam:PF00589.17:Phage_integrase;
Pfam_type:Family;HMM_aln_Length:83; HMM_Length:173;
EVALUE:9.6e-08; BITSCORE: 31.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0006259"
BEGIN
1 MGEWAESLRV KGTSADQIEL LKARVPRVNS GCGFDRVRDL NGDTAYTFIG GLKVREDSDQ
61 FASYQTRNFY LSAMKQFARF LIRRKILTEN PFYDLEPWDV RKDRKHDRRE VTADELQSLI
121 STTEVADVTR SKLSAVDRAM LYCVAVFTGL RSAELGSLRS ESFNLEPAEV TVPGKFTKNG
181 DPAVQPLPPA IVPLLTEWLM GKPANSLCWP GPWAKNKGAG KFLKADLEAA DVPYVKDGLF
241 ADFHGLRHEL RLAPDPKRGE PEGSVGAGAA QHDHTDRG
//