LOCUS VTS00701.1 534 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana atp-dependent dna ligase : ATP dependent
DNA ligase OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_1583
PE=4 SV=1: DNA_ligase_A_N: DNA_ligase_A_M: DNA_ligase_A_C
protein.
ACCESSION LR593886-7496
PROTEIN_ID VTS00701.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_80960"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|C1AD68|C1AD68_GEMAT ;
ALN/Q_length_ratio=0.991 ; DESCRIPTION=ATP-dependent DNA
ligase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586
/ JCM 11422 / NBRC 100505) GN=lig PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A7NPK3|A7NPK3_ROSCS ;
ALN/Q_length_ratio=1.011 ; DESCRIPTION=ATP dependent DNA
ligase OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=Rcas_3449 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.982"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|E3FRD2|E3FRD2_STIAD ;
ALN/Q_length_ratio=0.991 ; DESCRIPTION=DNA ligase,
ATP-dependent OS=Stigmatella aurantiaca (strain DW4/3-1)
GN=STAUR_6767 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A0A068NWH2|A0A068NWH2_9BACT ;
ALN/Q_length_ratio=1.052 ; DESCRIPTION=ATP dependent DNA
ligase OS=Fimbriimonas ginsengisoli Gsoil 348
GN=OP10G_3727 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.948"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5TNU6|M5TNU6_9PLAN ;
ALN/Q_length_ratio=0.993 ; DESCRIPTION=ATP-dependent DNA
ligase OS=Rhodopirellula sp. SWK7 GN=RRSWK_01842 PE=4 SV=1
; EVALUE=0.0 ; Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F8CIL7|F8CIL7_MYXFH ;
ALN/Q_length_ratio=0.991 ; DESCRIPTION=ATP-dependent DNA
ligase OS=Myxococcus fulvus (strain ATCC BAA-855 / HW-1)
GN=LILAB_15900 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D5SSZ9|D5SSZ9_PLAL2 ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=ATP dependent DNA
ligase OS=Planctomyces limnophilus (strain ATCC 43296 /
DSM 3776 / IFAM 1008 / 290) GN=Plim_3135 PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=0.914"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|S9PKP3|S9PKP3_9DELT ;
ALN/Q_length_ratio=0.994 ; DESCRIPTION=ATP-dependent DNA
ligase OS=Cystobacter fuscus DSM 2262 GN=D187_000252 PE=4
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5RQN7|M5RQN7_9PLAN ;
ALN/Q_length_ratio=0.991 ; DESCRIPTION=ATP-dependent DNA
ligase OS=Rhodopirellula maiorica SM1 GN=RMSM_06800 PE=4
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|U2SNJ6|U2SNJ6_9DELT ;
ALN/Q_length_ratio=0.991 ; DESCRIPTION=ATP-dependent DNA
ligase protein OS=Myxococcus sp. (contaminant ex DSM 436)
GN=A176_05634 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|Q020V4|Q020V4_SOLUE ;
ALN/Q_length_ratio=0.981 ; DESCRIPTION=ATP dependent DNA
ligase OS=Solibacter usitatus (strain Ellin6076)
GN=Acid_3563 PE=4 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A084SE48|A0A084SE48_9DELT ;
ALN/Q_length_ratio=0.994 ; DESCRIPTION=ATP-dependent DNA
ligase OS=Cystobacter violaceus Cb vi76 GN=Q664_52600 PE=4
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.006"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|H8MW57|H8MW57_CORCM ;
ALN/Q_length_ratio=0.993 ; DESCRIPTION=ATP-dependent DNA
ligase OS=Corallococcus coralloides (strain ATCC 25202 /
DSM 2259 / NBRC 100086 / M2) GN=ligB PE=4 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5TT77|M5TT77_9PLAN ;
ALN/Q_length_ratio=0.991 ; DESCRIPTION=ATP-dependent DNA
ligase OS=Rhodopirellula sallentina SM41 GN=RSSM_06363
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.002"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A5UTM2|A5UTM2_ROSS1 ;
ALN/Q_length_ratio=1.011 ; DESCRIPTION=ATP dependent DNA
ligase OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_1583
PE=4 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.967"
/note="Pfam_scan:hit_1 (1..162);
Pfam:PF04675.9:DNA_ligase_A_N;
Pfam_type:Family;HMM_aln_Length:173; HMM_Length:177;
EVALUE:3.7e-12; BITSCORE: 46.4"
/note="Pfam_scan:hit_2 (206..401);
Pfam:PF01068.16:DNA_ligase_A_M;
Pfam_type:Domain;HMM_aln_Length:182; HMM_Length:202;
EVALUE:2.2e-28; BITSCORE: 99.0"
/note="Pfam_scan:hit_3 (421..511);
Pfam:PF04679.10:DNA_ligase_A_C;
Pfam_type:Family;HMM_aln_Length:95; HMM_Length:97;
EVALUE:5e-11; BITSCORE: 42.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0043167"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0006259"
/note="GO_domain:GO:0016874"
/note="GO_domain:GO:0006950"
/note="Enzyme_Code:EC:6.5.1"
/note="Enzyme_Code:EC:6.5.1.1"
BEGIN
1 MKAFADLYAA LDATTKTTGK VEVLAGYFAA AAPDDAAWAV YFLSGRKPRQ AVPSKRLRLW
61 ARELAGVPEW LFDEAYHHVG DVAETVALLL PPAGHASDVP LSRWVEGHLL PLRDLEEEAQ
121 RAAVLAAWAE LDAGQRFVWN KLITGEFRVG VSQLLVVRAL AQVSKLPADV ISHRLMGAWE
181 PTPAFYAGLV AADSGDAELS RPYPFFLAHP LEGDPASLGP VAEWQAEWKW DGIRAQVVRR
241 GGQAFVWSRG EELVTDRYPE LKAMAAALPD GTVLDGELLP WRGGQVQPFA DLQKRIGRKT
301 VGKKLLDEVP VVLVAYDLVE VDGTDFRERP LGERRARLEA LVAATNHPAL VLSPRIEPES
361 WDALARERLG SRERRVEGVM LKRRDSPYRV GRVRGDWWKW KVEPFAVDAV LINAQGGHGK
421 RSGLFTDYTF AVWDGGALVP IAKAYSGLTD AEIKKVDAFV RANTLEKFGP VRAVKPELVF
481 ELGFEGIQAS SRHKSGVAVR FPRMLRWRTD KKPEEADTLD RVKALLNAPA EGGA
//