LOCUS VTS00214.1 205 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana extracytoplasmic sigma factor ecf :
RNA polymerase sigma factor, TIGR02999 family OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_4026 PE=4 SV=1: Sigma70_ECF protein.
ACCESSION LR593886-7333
PROTEIN_ID VTS00214.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_82590"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DFV0|L0DFV0_SINAD ;
ALN/Q_length_ratio=0.898 ; DESCRIPTION=RNA polymerase
sigma factor, TIGR02999 family OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_4026 PE=4 SV=1 ; EVALUE=8e-62 ;
Q/S_length_ratio=1.073"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|B9XBT1|B9XBT1_PEDPL ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pedosphaera parvula
(strain Ellin514) GN=Cflav_PD5601 PE=4 SV=1 ; EVALUE=3e-61
; Q/S_length_ratio=1.085"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A6CBR8|A6CBR8_9PLAN ;
ALN/Q_length_ratio=0.917 ; DESCRIPTION=Uncharacterized
protein OS=Planctomyces maris DSM 8797 GN=PM8797T_27367
PE=4 SV=1 ; EVALUE=1e-59 ; Q/S_length_ratio=1.079"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DL66|L0DL66_SINAD ;
ALN/Q_length_ratio=0.893 ; DESCRIPTION=RNA polymerase
sigma factor, TIGR02999 family OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_5446 PE=4 SV=1 ; EVALUE=3e-58 ;
Q/S_length_ratio=1.035"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|X1MHP8|X1MHP8_9ZZZZ ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S06H3_L01139 OS=marine sediment
metagenome GN=S06H3_14075 PE=4 SV=1 ; EVALUE=1e-57 ;
Q/S_length_ratio=1.079"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|X0S8X1|X0S8X1_9ZZZZ ;
ALN/Q_length_ratio=0.883 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L07814 OS=marine sediment
metagenome GN=S01H1_18078 PE=4 SV=1 ; EVALUE=3e-57 ;
Q/S_length_ratio=1.085"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A059X8Q4|A0A059X8Q4_9BACT ;
ALN/Q_length_ratio=0.932 ; DESCRIPTION=RNA polymerase
sigma factor, TIGR02999 family OS=uncultured bacterium
PE=4 SV=1 ; EVALUE=5e-57 ; Q/S_length_ratio=1.073"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5TXQ0|M5TXQ0_9PLAN ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_04606 PE=4 SV=1 ; EVALUE=2e-56 ;
Q/S_length_ratio=1.079"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5TFP7|M5TFP7_9PLAN ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_04777 PE=4 SV=1 ; EVALUE=6e-56 ;
Q/S_length_ratio=1.079"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5U5R1|M5U5R1_9PLAN ;
ALN/Q_length_ratio=0.898 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula sallentina
SM41 GN=RSSM_01735 PE=4 SV=1 ; EVALUE=8e-56 ;
Q/S_length_ratio=1.108"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|Q7UYG8|Q7UYG8_RHOBA ;
ALN/Q_length_ratio=0.922 ; DESCRIPTION=Putative
uncharacterized protein OS=Rhodopirellula baltica (strain
SH1) GN=RB621 PE=4 SV=1 ; EVALUE=3e-55 ;
Q/S_length_ratio=1.073"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5S8T7|M5S8T7_9PLAN ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula europaea SH398
GN=RESH_01589 PE=4 SV=1 ; EVALUE=7e-55 ;
Q/S_length_ratio=1.096"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|B9XAQ7|B9XAQ7_PEDPL ;
ALN/Q_length_ratio=0.883 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pedosphaera parvula
(strain Ellin514) GN=Cflav_PD5727 PE=4 SV=1 ; EVALUE=9e-55
; Q/S_length_ratio=1.096"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|B9XJ29|B9XJ29_PEDPL ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pedosphaera parvula
(strain Ellin514) GN=Cflav_PD3126 PE=4 SV=1 ; EVALUE=1e-54
; Q/S_length_ratio=1.120"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|K5DF17|K5DF17_RHOBT ;
ALN/Q_length_ratio=0.922 ; DESCRIPTION=RNA polymerase
sigma-70 ECF-like protein OS=Rhodopirellula baltica SH28
GN=RBSH_03328 PE=4 SV=1 ; EVALUE=1e-54 ;
Q/S_length_ratio=1.073"
/note="Pfam_scan:hit_1 (17..196);
Pfam:PF07638.6:Sigma70_ECF;
Pfam_type:Family;HMM_aln_Length:183; HMM_Length:185;
EVALUE:2.1e-51; BITSCORE: 174.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MWWWLLESGA GFILNPMNEI TRILDDVRAG RAGAAELLPL VYDELRRLAA AKLASEMPGH
61 TLEATALVHE AYLRLGHDQQ FDHRGHFFAA AAEAMRRILV DAARKKRTAK HGGDLNRLDA
121 EDVPIAAPRP DEDLVALDEA LNEFALLDPQ KAELVKLRYF VGMTIEQAAD AMEISPATAK
181 RHWVFSKAWL YQRMSGELPQ REEAN
//