LOCUS VTS00148.1 86 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana 50s ribosomal protein l28 : Marine
sediment metagenome DNA, contig: S01H4_C04838 OS=marine
sediment metagenome GN=S01H4_11764 PE=3 SV=1: Ribosomal_L28
protein.
ACCESSION LR593886-7311
PROTEIN_ID VTS00148.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_82810"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|X0YMU0|X0YMU0_9ZZZZ ;
ALN/Q_length_ratio=0.895 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H4_C04838 OS=marine sediment
metagenome GN=S01H4_11764 PE=3 SV=1 ; EVALUE=2e-21 ;
Q/S_length_ratio=1.024"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M2AER1|M2AER1_9PLAN ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=50S ribosomal
protein L28 OS=Rhodopirellula europaea 6C GN=rpmB PE=3
SV=1 ; EVALUE=8e-20 ; Q/S_length_ratio=0.905"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L7CDP5|L7CDP5_RHOBT ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=50S ribosomal
protein L28 OS=Rhodopirellula baltica SWK14 GN=rpmB PE=3
SV=1 ; EVALUE=8e-20 ; Q/S_length_ratio=0.905"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5SIW5|M5SIW5_9PLAN ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=50S ribosomal
protein L28 OS=Rhodopirellula europaea SH398 GN=rpmB PE=3
SV=1 ; EVALUE=8e-20 ; Q/S_length_ratio=0.905"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|F2B0V2|F2B0V2_RHOBT ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=50S ribosomal
protein L28 OS=Rhodopirellula baltica WH47 GN=rpmB PE=3
SV=1 ; EVALUE=8e-20 ; Q/S_length_ratio=0.905"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|K5D9I7|K5D9I7_RHOBT ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=50S ribosomal
protein L28 OS=Rhodopirellula baltica SH28 GN=rpmB PE=3
SV=1 ; EVALUE=1e-19 ; Q/S_length_ratio=0.956"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5STY1|M5STY1_9PLAN ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=50S ribosomal
protein L28 OS=Rhodopirellula sp. SWK7 GN=rpmB PE=3 SV=1 ;
EVALUE=1e-18 ; Q/S_length_ratio=0.819"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5UQN9|M5UQN9_9PLAN ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=50S ribosomal
protein L28 OS=Rhodopirellula sallentina SM41 GN=rpmB PE=3
SV=1 ; EVALUE=3e-18 ; Q/S_length_ratio=0.775"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5S5X1|M5S5X1_9PLAN ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=50S ribosomal
protein L28 OS=Rhodopirellula maiorica SM1 GN=rpmB PE=3
SV=1 ; EVALUE=4e-18 ; Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A3ZPT2|A3ZPT2_9PLAN ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=50S ribosomal
protein L28 OS=Blastopirellula marina DSM 3645 GN=rpmB
PE=3 SV=1 ; EVALUE=5e-17 ; Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|X0U574|X0U574_9ZZZZ ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_S10327 OS=marine sediment
metagenome GN=S01H1_39725 PE=3 SV=1 ; EVALUE=2e-16 ;
Q/S_length_ratio=0.945"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|I0ICM1|I0ICM1_PHYMF ;
ALN/Q_length_ratio=0.930 ; DESCRIPTION=50S ribosomal
protein L28 OS=Phycisphaera mikurensis (strain NBRC 102666
/ KCTC 22515 / FYK2301M01) GN=rpmB PE=3 SV=1 ;
EVALUE=2e-16 ; Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|D2R413|D2R413_PIRSD ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=50S ribosomal
protein L28 OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=rpmB PE=3 SV=1 ; EVALUE=3e-16 ;
Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|F0SQ11|F0SQ11_PLABD ;
ALN/Q_length_ratio=0.872 ; DESCRIPTION=Uncharacterized
protein OS=Planctomyces brasiliensis (strain ATCC 49424 /
DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)
GN=Plabr_3591 PE=4 SV=1 ; EVALUE=3e-15 ;
Q/S_length_ratio=0.827"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|E8R6R6|E8R6R6_ISOPI ;
ALN/Q_length_ratio=0.930 ; DESCRIPTION=50S ribosomal
protein L28 OS=Isosphaera pallida (strain ATCC 43644 / DSM
9630 / IS1B) GN=rpmB PE=3 SV=1 ; EVALUE=7e-15 ;
Q/S_length_ratio=0.811"
/note="Pfam_scan:hit_1 (3..74);
Pfam:PF00830.14:Ribosomal_L28;
Pfam_type:Family;HMM_aln_Length:55; HMM_Length:61;
EVALUE:1.1e-10; BITSCORE: 41.1"
/note="GO_domain:GO:0003735"
/note="GO_domain:GO:0042254"
/note="GO_domain:GO:0005840"
/note="GO_domain:GO:0006412"
BEGIN
1 MAKTCVFTGK KAVFGNRKKY RGKAKYLGGV GKKILGTSRR KFKPNLQKMR CVVDGVVKKV
61 WVSASAIRSG LVVKPVKVKP FEKVNV
//