LOCUS VTR99612.1 249 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana 50s ribosomal protein l4 : 50S ribosomal
protein L4 OS=Singulisphaera acidiphila (strain ATCC BAA-
1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rplD PE=3 SV=
1: Ribosomal_L4 protein.
ACCESSION LR593886-7133
PROTEIN_ID VTR99612.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_84590"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D6A2|L0D6A2_SINAD ;
ALN/Q_length_ratio=0.912 ; DESCRIPTION=50S ribosomal
protein L4 OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rplD PE=3
SV=1 ; EVALUE=4e-78 ; Q/S_length_ratio=1.008"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|E8R3S5|E8R3S5_ISOPI ;
ALN/Q_length_ratio=0.936 ; DESCRIPTION=50S ribosomal
protein L4 OS=Isosphaera pallida (strain ATCC 43644 / DSM
9630 / IS1B) GN=rplD PE=3 SV=1 ; EVALUE=8e-72 ;
Q/S_length_ratio=0.973"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A6CGN1|A6CGN1_9PLAN ;
ALN/Q_length_ratio=0.811 ; DESCRIPTION=50S ribosomal
protein L4 OS=Planctomyces maris DSM 8797 GN=rplD PE=3
SV=1 ; EVALUE=5e-67 ; Q/S_length_ratio=1.191"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0SJ87|F0SJ87_PLABD ;
ALN/Q_length_ratio=0.815 ; DESCRIPTION=50S ribosomal
protein L4 OS=Planctomyces brasiliensis (strain ATCC 49424
/ DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=rplD
PE=3 SV=1 ; EVALUE=1e-66 ; Q/S_length_ratio=1.147"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L7CJ17|L7CJ17_RHOBT ;
ALN/Q_length_ratio=0.807 ; DESCRIPTION=50S ribosomal
protein L4 OS=Rhodopirellula baltica SWK14 GN=rplD PE=3
SV=1 ; EVALUE=1e-65 ; Q/S_length_ratio=1.122"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F2AT36|F2AT36_RHOBT ;
ALN/Q_length_ratio=0.807 ; DESCRIPTION=50S ribosomal
protein L4 OS=Rhodopirellula baltica WH47 GN=rplD PE=3
SV=1 ; EVALUE=1e-65 ; Q/S_length_ratio=1.122"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M2AU42|M2AU42_9PLAN ;
ALN/Q_length_ratio=0.807 ; DESCRIPTION=50S ribosomal
protein L4 OS=Rhodopirellula europaea 6C GN=rplD PE=3 SV=1
; EVALUE=1e-65 ; Q/S_length_ratio=1.122"
/note="BLAST_uniprot:hit_10 ; ACCESSION=Q7UN19 ;
ALN/Q_length_ratio=0.807 ; DESCRIPTION=50S ribosomal
protein L4 OS=Rhodopirellula baltica (strain SH1) GN=rplD
PE=3 SV=1 ; EVALUE=1e-65 ; Q/S_length_ratio=1.122"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5S5J0|M5S5J0_9PLAN ;
ALN/Q_length_ratio=0.807 ; DESCRIPTION=50S ribosomal
protein L4 OS=Rhodopirellula europaea SH398 GN=rplD PE=3
SV=1 ; EVALUE=1e-65 ; Q/S_length_ratio=1.122"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|K5DC20|K5DC20_RHOBT ;
ALN/Q_length_ratio=0.807 ; DESCRIPTION=50S ribosomal
protein L4 OS=Rhodopirellula baltica SH28 GN=rplD PE=3
SV=1 ; EVALUE=1e-65 ; Q/S_length_ratio=1.122"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5T4S9|M5T4S9_9PLAN ;
ALN/Q_length_ratio=0.811 ; DESCRIPTION=50S ribosomal
protein L4 OS=Rhodopirellula sp. SWK7 GN=rplD PE=3 SV=1 ;
EVALUE=4e-65 ; Q/S_length_ratio=1.117"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5RIH5|M5RIH5_9PLAN ;
ALN/Q_length_ratio=0.811 ; DESCRIPTION=50S ribosomal
protein L4 OS=Rhodopirellula maiorica SM1 GN=rplD PE=3
SV=1 ; EVALUE=2e-64 ; Q/S_length_ratio=1.153"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|D2R5T8|D2R5T8_PIRSD ;
ALN/Q_length_ratio=0.827 ; DESCRIPTION=50S ribosomal
protein L4 OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=rplD PE=3 SV=1 ; EVALUE=9e-64 ;
Q/S_length_ratio=1.191"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5U4M8|M5U4M8_9PLAN ;
ALN/Q_length_ratio=0.799 ; DESCRIPTION=50S ribosomal
protein L4 OS=Rhodopirellula sallentina SM41 GN=rplD PE=3
SV=1 ; EVALUE=2e-62 ; Q/S_length_ratio=1.142"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A3ZLH0|A3ZLH0_9PLAN ;
ALN/Q_length_ratio=0.807 ; DESCRIPTION=50S ribosomal
protein L4 OS=Blastopirellula marina DSM 3645 GN=rplD PE=3
SV=1 ; EVALUE=9e-59 ; Q/S_length_ratio=1.122"
/note="Pfam_scan:hit_1 (43..246);
Pfam:PF00573.17:Ribosomal_L4;
Pfam_type:Family;HMM_aln_Length:188; HMM_Length:192;
EVALUE:3e-54; BITSCORE: 183.3"
/note="GO_domain:GO:0003735"
/note="GO_domain:GO:0042254"
/note="GO_domain:GO:0005840"
/note="GO_domain:GO:0006412"
BEGIN
1 MADSTTPETP ETGAVAPVAR HIEVATSITV PVVNRAGEEV GTVTIDPAEF GGKISRQLMH
61 DVVLMYLANQ RAGTHHTLRR GQVAGSTKKL FRQKGTGNAR AGTKRTNKRR GGGTAKGPKP
121 RDYEYHLPKK AVKAATRMAV LSKLLDKQAI IIDDLTMAAP KTKEMTGVLK AIKIGKKTTE
181 KGEQDVTLLD TTVLIGTDKL DQNVYKSARN IQGVKVLPAA EFNCYTVLKQ RRLVLTRSAL
241 ESLRAAGKK
//