LOCUS VTR99597.1 246 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana 30s ribosomal protein s3 : 30S ribosomal
protein S3 OS=Isosphaera pallida (strain ATCC 43644 /
DSM 9630 / IS1B) GN=rpsC PE=3 SV=1: KH_2: Ribosomal_S3_C
protein.
ACCESSION LR593886-7128
PROTEIN_ID VTR99597.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_84640"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|E8R3T0|E8R3T0_ISOPI ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=30S ribosomal
protein S3 OS=Isosphaera pallida (strain ATCC 43644 / DSM
9630 / IS1B) GN=rpsC PE=3 SV=1 ; EVALUE=8e-95 ;
Q/S_length_ratio=1.051"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D699|L0D699_SINAD ;
ALN/Q_length_ratio=0.907 ; DESCRIPTION=30S ribosomal
protein S3 OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rpsC PE=3
SV=1 ; EVALUE=7e-94 ; Q/S_length_ratio=1.051"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|X0SYI9|X0SYI9_9ZZZZ ;
ALN/Q_length_ratio=0.850 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L05462 (Fragment) OS=marine
sediment metagenome GN=S01H1_14048 PE=3 SV=1 ;
EVALUE=6e-87 ; Q/S_length_ratio=1.177"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D2R5U3|D2R5U3_PIRSD ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=30S ribosomal
protein S3 OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=rpsC PE=3 SV=1 ; EVALUE=5e-86 ;
Q/S_length_ratio=1.038"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5RU68|M5RU68_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=30S ribosomal
protein S3 OS=Rhodopirellula maiorica SM1 GN=rpsC PE=3
SV=1 ; EVALUE=6e-85 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|X0SPK0|X0SPK0_9ZZZZ ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L00396 OS=marine sediment
metagenome GN=S01H1_04181 PE=3 SV=1 ; EVALUE=7e-85 ;
Q/S_length_ratio=1.065"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5T4S4|M5T4S4_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=30S ribosomal
protein S3 OS=Rhodopirellula sp. SWK7 GN=rpsC PE=3 SV=1 ;
EVALUE=9e-85 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5S5I5|M5S5I5_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=30S ribosomal
protein S3 OS=Rhodopirellula europaea SH398 GN=rpsC PE=3
SV=1 ; EVALUE=2e-84 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L7CJ11|L7CJ11_RHOBT ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=30S ribosomal
protein S3 OS=Rhodopirellula baltica SWK14 GN=rpsC PE=3
SV=1 ; EVALUE=2e-84 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|F2AT41|F2AT41_RHOBT ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=30S ribosomal
protein S3 OS=Rhodopirellula baltica WH47 GN=rpsC PE=3
SV=1 ; EVALUE=2e-84 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|K5DC15|K5DC15_RHOBT ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=30S ribosomal
protein S3 OS=Rhodopirellula baltica SH28 GN=rpsC PE=3
SV=1 ; EVALUE=2e-84 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_13 ; ACCESSION=Q7UN14 ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=30S ribosomal
protein S3 OS=Rhodopirellula baltica (strain SH1) GN=rpsC
PE=3 SV=1 ; EVALUE=2e-84 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M2AU37|M2AU37_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=30S ribosomal
protein S3 OS=Rhodopirellula europaea 6C GN=rpsC PE=3 SV=1
; EVALUE=2e-84 ; Q/S_length_ratio=1.042"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A3ZLG5|A3ZLG5_9PLAN ;
ALN/Q_length_ratio=0.976 ; DESCRIPTION=30S ribosomal
protein S3 OS=Blastopirellula marina DSM 3645 GN=rpsC PE=3
SV=1 ; EVALUE=4e-80 ; Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F0SJ92|F0SJ92_PLABD ;
ALN/Q_length_ratio=0.931 ; DESCRIPTION=30S ribosomal
protein S3 OS=Planctomyces brasiliensis (strain ATCC 49424
/ DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=rpsC
PE=3 SV=1 ; EVALUE=3e-78 ; Q/S_length_ratio=1.056"
/note="Pfam_scan:hit_1 (38..119); Pfam:PF07650.12:KH_2;
Pfam_type:Domain;HMM_aln_Length:75; HMM_Length:78;
EVALUE:6.2e-16; BITSCORE: 57.7"
/note="Pfam_scan:hit_2 (127..210);
Pfam:PF00189.15:Ribosomal_S3_C;
Pfam_type:Domain;HMM_aln_Length:83; HMM_Length:85;
EVALUE:1.7e-27; BITSCORE: 95.4"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0003735"
/note="GO_domain:GO:0042254"
/note="GO_domain:GO:0005840"
/note="GO_domain:GO:0006412"
BEGIN
1 MGQKVRPTGF RTGIMRPWRS TWYASKQDFA ELLLEDVAIR AFIQKFLTNK KDRKEQRPAI
61 AEIRIERTRE RVTVVVTSSR VGAIIGKKGE KIDKLTKALE KLTRRHIEVK TVEVTRPEID
121 AQLIAEDIAE QLEKRASFRR TMKQAMQRAM EGGAKGVKLQ LSGRLGGAEM ARCEKGMEGS
181 IPLSTLRCKV EYGFAEAVTP QGNIGIKAWV NQGDYLTGDI ADTTDAQAGQ NQRRRPRRGG
241 APRNNG
//