LOCUS VTR99365.1 213 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma70 : RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica SH28 GN=RBSH_05048 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-7050
PROTEIN_ID VTR99365.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_85420"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|K5CZL2|K5CZL2_RHOBT ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica SH28 GN=RBSH_05048 PE=4 SV=1 ; EVALUE=7e-68 ;
Q/S_length_ratio=0.955"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|F2AWE2|F2AWE2_RHOBT ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica WH47 GN=RBWH47_01220 PE=4 SV=1 ; EVALUE=8e-68 ;
Q/S_length_ratio=0.955"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L7C7W0|L7C7W0_RHOBT ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica SWK14 GN=RBSWK_05957 PE=4 SV=1 ; EVALUE=9e-68 ;
Q/S_length_ratio=0.955"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5SB21|M5SB21_9PLAN ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
europaea SH398 GN=RESH_00604 PE=4 SV=1 ; EVALUE=1e-67 ;
Q/S_length_ratio=0.964"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M2B794|M2B794_9PLAN ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
europaea 6C GN=RE6C_01156 PE=4 SV=1 ; EVALUE=1e-67 ;
Q/S_length_ratio=0.964"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|Q7UKZ0|Q7UKZ0_RHOBA ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=Probable RNA
polymerase sigma factor cnrH OS=Rhodopirellula baltica
(strain SH1) GN=cnrH PE=4 SV=1 ; EVALUE=2e-66 ;
Q/S_length_ratio=0.955"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|D5SV26|D5SV26_PLAL2 ;
ALN/Q_length_ratio=0.958 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_3499 PE=4 SV=1
; EVALUE=9e-64 ; Q/S_length_ratio=1.014"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A3ZRA7|A3ZRA7_9PLAN ;
ALN/Q_length_ratio=0.826 ; DESCRIPTION=Probable RNA
polymerase sigma factor cnrH OS=Blastopirellula marina DSM
3645 GN=DSM3645_12951 PE=4 SV=1 ; EVALUE=9e-61 ;
Q/S_length_ratio=1.024"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5U881|M5U881_9PLAN ;
ALN/Q_length_ratio=0.958 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
sallentina SM41 GN=RSSM_00921 PE=4 SV=1 ; EVALUE=5e-60 ;
Q/S_length_ratio=0.986"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5SZV8|M5SZV8_9PLAN ;
ALN/Q_length_ratio=0.958 ; DESCRIPTION=RNA polymerase
sigma factor cnrH OS=Rhodopirellula sp. SWK7
GN=RRSWK_04976 PE=4 SV=1 ; EVALUE=7e-60 ;
Q/S_length_ratio=0.986"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D2R2W5|D2R2W5_PIRSD ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_4045
PE=4 SV=1 ; EVALUE=3e-57 ; Q/S_length_ratio=0.991"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DC52|L0DC52_SINAD ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=RNA polymerase
sigma-70 factor, Planctomycetaceae-specific subfamily 1
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_1889 PE=4 SV=1 ;
EVALUE=1e-54 ; Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5RL61|M5RL61_9PLAN ;
ALN/Q_length_ratio=0.948 ; DESCRIPTION=RNA polymerase
sigma factor cnrH OS=Rhodopirellula maiorica SM1
GN=RMSM_06966 PE=4 SV=1 ; EVALUE=2e-54 ;
Q/S_length_ratio=0.959"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DND2|L0DND2_SINAD ;
ALN/Q_length_ratio=0.977 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6693 PE=4 SV=1 ; EVALUE=3e-45 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DB31|L0DB31_SINAD ;
ALN/Q_length_ratio=0.920 ; DESCRIPTION=RNA polymerase
sigma-70 factor, Planctomycetaceae-specific subfamily 1
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_2102 PE=4 SV=1 ;
EVALUE=1e-41 ; Q/S_length_ratio=1.000"
/note="Pfam_scan:hit_1 (31..100);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:71;
EVALUE:7.7e-05; BITSCORE: 22.2"
/note="Pfam_scan:hit_2 (145..198);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:1.6e-10; BITSCORE: 40.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MWPNREETDR LLDRARSGEP GAVDQLLGEF RGPLRQVVDL RLDPAVARRV DASDIVQDVL
61 VEANQRLTEY LKKPDMPFHL WLRHLAQDRI IDTHRRHRLA QRRSVDREQS IARPGWTDES
121 SASLVAHLID PERTPGSEAI RLELQRRLTT AINQLSDDDR EIILMRHHEG LSNQDVAHAL
181 QLTEAAASMR YLRALRRLKS VLVPDGQEPT DGI
//