LOCUS VTR98948.1 603 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_5383 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: Secretin_N protein.
ACCESSION LR593886-6911
PROTEIN_ID VTR98948.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_01040"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.476 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=6e-47 ;
Q/S_length_ratio=1.890"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.371 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=3e-42 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.420 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=4e-38 ;
Q/S_length_ratio=0.982"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.502 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=4e-38 ;
Q/S_length_ratio=0.859"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.459 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-37 ;
Q/S_length_ratio=1.422"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.458 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=1.077"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.327 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.491"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.434 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=0.547"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.405 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.433 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=6e-36 ;
Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.333 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=1.204"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.521 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=1.088"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.449 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=6e-35 ;
Q/S_length_ratio=1.054"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=0.411 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=0.833"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.411 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=0.633"
/note="Pfam_scan:hit_1 (38..110);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71;
EVALUE:1.8e-12; BITSCORE: 46.6"
/note="Pfam_scan:hit_2 (132..184);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:8.1e-11; BITSCORE: 41.2"
/note="Pfam_scan:hit_3 (537..596);
Pfam:PF03958.12:Secretin_N;
Pfam_type:Domain;HMM_aln_Length:77; HMM_Length:82;
EVALUE:4e-11; BITSCORE: 42.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MITALLHAVT RKIEAVTPDA ELLARFVRER DEPAFEELVR RHGPLVWAVC RQLLPHHADA
61 EDAFQAVFLA LVRSAPRIRN GRTIPAWLHG VAIRVATRAK REFARRRARE RNAAHSEVAP
121 SVSDAAWGAL VATVHEEVQQ LPEAERTVFV LCELEGVSQS DAAIRLGWPL GSVSGRLCKA
181 RQFLLSRLTA RGVAPAAVVG IGLTAGAASA LPAKLFNAVK TFPVSPGAAS NTATALARGL
241 TEGVTMRMKL FAATGVVALA FGLTGGAVWM SKVDAQQPGG GAGRPGPAGG FPGAPGGAPP
301 GLGGPGVGAG GPPGAGAPGA GGLPPGAPGG ITGFSPGMPG MSGPGSSAVA PKTVWDYKFV
361 DVNNDRRDFE KVITQHGKDG WEFCSSNLFG QNDLVLVFKK RKGGDPAPFF GGMPGPGMMG
421 PGGMIGVPGS GPVPGGPMPT GGSGLPGRPG AGPMGPGSGP TPGAEGPGGS LGGVIGGPGA
481 GPMPGGASAG AGLKVVVPTG PGSGPAPGAE GSGPPFGGLP GSGPGMMPGG ARGGAGLKVV
541 VLKHAIAEEL VPVLKKVFPN AEITADARTN QLIVRADTEL FQEVSKLLEK LDVDIPTGNR
601 PRK
//