LOCUS VTR98031.1 236 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana RNA polymerase sigma factor, sigma-
70 family OS=Planctomyces limnophilus (strain ATCC 43296
/ DSM 3776 / IFAM 1008 / 290) GN=Plim_0986 PE=4 SV=1 protein.
ACCESSION LR593886-6595
PROTEIN_ID VTR98031.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_04200"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5ST62|D5ST62_PLAL2 ;
ALN/Q_length_ratio=0.716 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_0986 PE=4 SV=1 ; EVALUE=5e-27 ;
Q/S_length_ratio=1.168"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5RQ59|M5RQ59_9PLAN ;
ALN/Q_length_ratio=0.754 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
maiorica SM1 GN=RMSM_06978 PE=4 SV=1 ; EVALUE=3e-21 ;
Q/S_length_ratio=1.113"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5UII0|M5UII0_9PLAN ;
ALN/Q_length_ratio=0.720 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
sallentina SM41 GN=RSSM_00910 PE=4 SV=1 ; EVALUE=2e-19 ;
Q/S_length_ratio=1.151"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DJB5|L0DJB5_SINAD ;
ALN/Q_length_ratio=0.737 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4755 PE=4 SV=1 ; EVALUE=4e-18 ;
Q/S_length_ratio=1.135"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A3ZMN1|A3ZMN1_9PLAN ;
ALN/Q_length_ratio=0.733 ; DESCRIPTION=Probable
extracytoplasmic function alternative sigma factor
OS=Blastopirellula marina DSM 3645 GN=DSM3645_00780 PE=4
SV=1 ; EVALUE=4e-15 ; Q/S_length_ratio=1.180"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5SZY3|M5SZY3_9PLAN ;
ALN/Q_length_ratio=0.742 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula sp.
SWK7 GN=RRSWK_04987 PE=4 SV=1 ; EVALUE=8e-15 ;
Q/S_length_ratio=1.151"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DF65|L0DF65_SINAD ;
ALN/Q_length_ratio=0.686 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3223 PE=4 SV=1 ; EVALUE=5e-14 ;
Q/S_length_ratio=1.108"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5U7W8|M5U7W8_9PLAN ;
ALN/Q_length_ratio=0.729 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
sallentina SM41 GN=RSSM_06514 PE=4 SV=1 ; EVALUE=1e-13 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5S1W9|M5S1W9_9PLAN ;
ALN/Q_length_ratio=0.729 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
europaea SH398 GN=RESH_03826 PE=4 SV=1 ; EVALUE=3e-13 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7UFH2|Q7UFH2_RHOBA ;
ALN/Q_length_ratio=0.746 ; DESCRIPTION=Probable ECF sigma
factor OS=Rhodopirellula baltica (strain SH1) GN=sigW PE=4
SV=1 ; EVALUE=6e-13 ; Q/S_length_ratio=1.118"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5S5R5|M5S5R5_9PLAN ;
ALN/Q_length_ratio=0.763 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
maiorica SM1 GN=RMSM_00063 PE=4 SV=1 ; EVALUE=7e-13 ;
Q/S_length_ratio=1.135"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M2B2Z3|M2B2Z3_9PLAN ;
ALN/Q_length_ratio=0.729 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
europaea 6C GN=RE6C_02934 PE=4 SV=1 ; EVALUE=7e-13 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5SU82|M5SU82_9PLAN ;
ALN/Q_length_ratio=0.725 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula sp. SWK7 GN=RRSWK_07091
PE=4 SV=1 ; EVALUE=7e-13 ; Q/S_length_ratio=1.283"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L7CA22|L7CA22_RHOBT ;
ALN/Q_length_ratio=0.729 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Rhodopirellula
baltica SWK14 GN=RBSWK_05023 PE=4 SV=1 ; EVALUE=9e-13 ;
Q/S_length_ratio=1.174"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F2AK44|F2AK44_RHOBT ;
ALN/Q_length_ratio=0.746 ; DESCRIPTION=RNA polymerase
sigma factor Y OS=Rhodopirellula baltica WH47
GN=RBWH47_03830 PE=4 SV=1 ; EVALUE=1e-12 ;
Q/S_length_ratio=1.146"
BEGIN
1 MMNTFGPRGT SRIPTQNETA RDFVRLFGPV VYALARKRGF GDAAAADLTQ EVLTRAAQNE
61 GHKADDSGRN TIHARLITAT QSAIAAIGAA KEDRSHRASG TPDLNADWES EFQRQLAKSA
121 MGFVKREFPS LDWQAFWGTA VDGRPEAVVA RELGMTSGTV HVVKCRVLAR LHEEMHRLRL
181 EAESWGGPAR SADQQKGDVA QNPDRLLSSQ APIYLSAPAP GSAERTSLHI PRCWKQ
//