LOCUS VTR97747.1 369 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-6453
PROTEIN_ID VTR97747.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_05620"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.661 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=5e-34 ;
Q/S_length_ratio=0.601"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.688 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=5e-32 ;
Q/S_length_ratio=0.837"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.846 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-31 ;
Q/S_length_ratio=0.659"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DE85|L0DE85_SINAD ;
ALN/Q_length_ratio=0.799 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3292 PE=4 SV=1 ; EVALUE=2e-29 ;
Q/S_length_ratio=0.704"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.737 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-29 ;
Q/S_length_ratio=0.301"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.699 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=4e-29 ;
Q/S_length_ratio=0.413"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.575 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=3e-28 ;
Q/S_length_ratio=0.737"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.753 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=9e-27 ;
Q/S_length_ratio=0.666"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.680 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=4e-26 ;
Q/S_length_ratio=0.599"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.653 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=3e-25 ;
Q/S_length_ratio=0.766"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.808 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=3e-25 ;
Q/S_length_ratio=0.335"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.688 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=6e-25 ;
Q/S_length_ratio=0.387"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.450 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=8e-24 ;
Q/S_length_ratio=0.618"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.705 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=1e-23 ;
Q/S_length_ratio=0.526"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.756 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=3e-23 ;
Q/S_length_ratio=0.385"
/note="Pfam_scan:hit_1 (41..105);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:64; HMM_Length:71;
EVALUE:1.6e-09; BITSCORE: 37.2"
/note="Pfam_scan:hit_2 (130..182);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:4.6e-08; BITSCORE: 32.4"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MNKITELLAT AGRLNAARDI DDAALLARFA ADRDPVAFEV LVWRHGGLVR GVCRRYLADP
61 ADIDDATQAA FIALARRAHS VRSVGPWLAR VAAHAARRLR QANAVWAARH APITVDVPAS
121 TPAPDDGWRC ALAEEIAGLP DHYRAIVRRC YLDGLSASEA AREFGWARGT VLTRLAWAKV
181 RLRQRLTARG VTLGAGGVVG LLFQLAAGPV TRAAARDIVR AMTGAPGARV SQITDGVLTA
241 MFWTKVNFAI GAALVTCTAA LVGAAGANTG SAADNQSVVA LAPAPRVSQT TPATTRGAAT
301 PVKSQTEITP RASNGPVKTK PGVGPGGGAG FGPGAAPAPG EASKPMKTKP GAGPGFGAGT
361 GGGATPIEP
//