LOCUS VTR97686.1 996 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2:
WD40: WD40 protein.
ACCESSION LR593886-6422
PROTEIN_ID VTR97686.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_05930"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.909 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-57 ;
Q/S_length_ratio=0.859"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.269 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=1.779"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.211 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=5e-37 ;
Q/S_length_ratio=3.122"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.249 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=2.349"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.302 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=1.644"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DDY6|L0DDY6_SINAD ;
ALN/Q_length_ratio=0.351 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2787 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.824"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.254 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=0.904"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.280 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=5e-35 ;
Q/S_length_ratio=1.419"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=0.192 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DHB1|L0DHB1_SINAD ;
ALN/Q_length_ratio=0.275 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4458 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=1.023"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.239 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=3e-34 ;
Q/S_length_ratio=1.622"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.284 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=8e-33 ;
Q/S_length_ratio=2.066"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.241 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=3e-32 ;
Q/S_length_ratio=1.741"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.232 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=6e-31 ;
Q/S_length_ratio=2.259"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|U5N4Y1|U5N4Y1_9BURK ;
ALN/Q_length_ratio=0.528 ; DESCRIPTION=NTPase-like protein
OS=Candidatus Symbiobacter mobilis CR GN=Cenrod_0250 PE=4
SV=1 ; EVALUE=6e-31 ; Q/S_length_ratio=0.865"
/note="Pfam_scan:hit_1 (42..114);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:71;
EVALUE:1.6e-08; BITSCORE: 33.9"
/note="Pfam_scan:hit_2 (142..195);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:3.5e-09; BITSCORE: 35.9"
/note="Pfam_scan:hit_3 (506..540); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:32; HMM_Length:39;
EVALUE:2.2e-08; BITSCORE: 33.6"
/note="Pfam_scan:hit_4 (849..887); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:34; HMM_Length:39;
EVALUE:2.9e-08; BITSCORE: 33.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSVAAVRRVV SRLEPGGPRT DAELVRAIAP DGVDRESAFA ELVNRHGPMV LGVCRGVLAD
61 SHAAEDAFQA VFLVLARKAN SIHPPGAVGG WLYGVAVRTA RKSKTATVRQ RRREMAAIVS
121 AGSAPTSTGS AAPGELERAE LRAIIDAELA VLPDTHRAAI VLCDLQGKTR SEAALELDRA
181 EGTVAAWLAR GRKTLANRLA RRGVSLPATG LVTVVTPSIV SAELTSVTIG SFVGRGVSDS
241 VLALAEGVMR SLSSTSTKLV TTVLTVGALL TAVATAPAWY AHPEPIAPPS TGAATVSGAE
301 PRAKAASSLW KEAKVLELTG WLGGSAVYSA DGKVLFIGGT DGHVHAYDVV SWKKLWEYRG
361 AGHFAALAVV PDGKELAVTT KDGVMFLDAL TGKANDTLEV RESAPYAVAF FPDTPILSDG
421 QLVATSRKVI FGSAREATVK SWLKWPNVST ITLQARAADK QPSDSHAVPL AVDPDGKRVV
481 VTGSLDKATG KNVLWAWAAG SGAGNELLEG HKATVVSAAW SKDGKWIVTG DADGTVIVWD
541 AVKFKEKSRL ALGGRIAAVT VSADGKHTAA AVVQPQERRE RAYSEEVFVW PTARPPEKPE
601 LISSHPVGGP FAGIASLAFH PDGTELTSAF ANFDHLSKLG ELTGKVRVFT LSVPEKPAPK
661 PAADHNWSQS SVLTDHAALV NGVAVAPDGK SFAAATDANV TCWDTVTRRV LWTYKPFNGN
721 APVLALAYSP DSKHLCVAGP IDVMRLDIAT GKSAAWYDQN EIVVRFGKMH ALAYHPERER
781 LAASDGYATK VQNLAQESEG VFNGERPEES KPLPVLPASV AWSKGGKQLA LIRHKQDKSC
841 VVLWEPGRAE SEVELTGHAE RITCVVWSQD GDVIASGDDK GTVILWDART HKELWRKRYG
901 DGAGRIHALA ISPEDNTVAI ASHLGARKGP ERVVLLAAKD GAEIRHLLGP EETAVSSLVW
961 SSDGKFLVTG CGMPAARAGG QAAPRVGEVV VWERKP
//