LOCUS VTR97221.1 183 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana ecf subfamily rna polymerase sigma-
24 subunit : RNA polymerase sigma factor OS=Planctomyces
maris DSM 8797 GN=PM8797T_00427 PE=3 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-6186
PROTEIN_ID VTR97221.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_08290"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A6CBP0|A6CBP0_9PLAN ;
ALN/Q_length_ratio=0.847 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces maris DSM 8797
GN=PM8797T_00427 PE=3 SV=1 ; EVALUE=5e-44 ;
Q/S_length_ratio=1.058"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D2R452|D2R452_PIRSD ;
ALN/Q_length_ratio=0.847 ; DESCRIPTION=RNA polymerase
sigma factor OS=Pirellula staleyi (strain ATCC 27377 / DSM
6068 / ICPB 4128) GN=Psta_4253 PE=3 SV=1 ; EVALUE=6e-39 ;
Q/S_length_ratio=0.759"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|X1DQ86|X1DQ86_9ZZZZ ;
ALN/Q_length_ratio=0.869 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H4_S21252 (Fragment) OS=marine
sediment metagenome GN=S01H4_61381 PE=4 SV=1 ;
EVALUE=3e-34 ; Q/S_length_ratio=1.083"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|B1ZYF6|B1ZYF6_OPITP ;
ALN/Q_length_ratio=0.847 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Opitutus terrae (strain
DSM 11246 / PB90-1) GN=Oter_3779 PE=4 SV=1 ; EVALUE=1e-30
; Q/S_length_ratio=1.034"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|B1ZQA9|B1ZQA9_OPITP ;
ALN/Q_length_ratio=0.814 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Opitutus terrae (strain
DSM 11246 / PB90-1) GN=Oter_0299 PE=4 SV=1 ; EVALUE=4e-29
; Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|G8NVE0|G8NVE0_GRAMM ;
ALN/Q_length_ratio=0.863 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Granulicella mallensis
(strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8)
GN=AciX8_2202 PE=4 SV=1 ; EVALUE=7e-28 ;
Q/S_length_ratio=1.034"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|Q67R63|Q67R63_SYMTH ;
ALN/Q_length_ratio=0.913 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=STH845 PE=4 SV=1 ; EVALUE=4e-25
; Q/S_length_ratio=0.880"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A0A075TS46|A0A075TS46_9CORY ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=RNA polymerase
sigma factor SigE OS=Corynebacterium atypicum
GN=CATYP_06785 PE=4 SV=1 ; EVALUE=1e-23 ;
Q/S_length_ratio=0.813"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|D5EMV9|D5EMV9_CORAD ;
ALN/Q_length_ratio=0.809 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Coraliomargarita
akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 /
KCTC 12865) GN=Caka_2332 PE=4 SV=1 ; EVALUE=1e-23 ;
Q/S_length_ratio=1.040"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|D1C360|D1C360_SPHTD ;
ALN/Q_length_ratio=0.973 ; DESCRIPTION=RNA polymerase
sigma factor OS=Sphaerobacter thermophilus (strain DSM
20745 / S 6022) GN=Sthe_1242 PE=3 SV=1 ; EVALUE=1e-23 ;
Q/S_length_ratio=0.897"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D5EK23|D5EK23_CORAD ;
ALN/Q_length_ratio=0.831 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Coraliomargarita
akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 /
KCTC 12865) GN=Caka_1753 PE=4 SV=1 ; EVALUE=2e-23 ;
Q/S_length_ratio=1.070"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|S3WVF1|S3WVF1_9ACTO ;
ALN/Q_length_ratio=0.880 ; DESCRIPTION=RNA polymerase
sigma factor OS=Propionibacterium sp. oral taxon 192 str.
F0372 GN=HMPREF1531_01974 PE=3 SV=1 ; EVALUE=5e-23 ;
Q/S_length_ratio=0.884"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|C7QDX3|C7QDX3_CATAD ;
ALN/Q_length_ratio=0.852 ; DESCRIPTION=RNA polymerase
sigma factor OS=Catenulispora acidiphila (strain DSM 44928
/ NRRL B-24433 / NBRC 102108 / JCM 14897) GN=Caci_7737
PE=3 SV=1 ; EVALUE=6e-23 ; Q/S_length_ratio=0.718"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A059WPR5|A0A059WPR5_9BACT ;
ALN/Q_length_ratio=0.929 ;
DESCRIPTION=Nucleotidyltransferase domain protein
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=8e-23 ;
Q/S_length_ratio=0.958"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|D7GDD3|D7GDD3_PROFC ;
ALN/Q_length_ratio=0.874 ; DESCRIPTION=RNA polymerase
sigma factor OS=Propionibacterium freudenreichii subsp.
shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1)
GN=rpoE PE=3 SV=1 ; EVALUE=9e-23 ; Q/S_length_ratio=0.843"
/note="Pfam_scan:hit_1 (10..78);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:3.6e-16; BITSCORE: 58.5"
/note="Pfam_scan:hit_2 (104..156);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:54;
EVALUE:3.4e-12; BITSCORE: 45.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MASSGGLPQL IDAHYEALYR YAYRLSGSAA DAEDLTQETF GKALARLPQL RELERARAWL
61 FRILRNLYLH KVRDQKRHKV VPLDAVGDLP QQTGDDPVPE IDPVKLQHVL DELDETFRTP
121 IILFYFEEFS YRDIAEQMEL PIGTVMSRLA RGKAYLRTRL SPADEADRER TAPAPKKVTD
181 GLP
//