LOCUS VTR97047.1 608 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-6099
PROTEIN_ID VTR97047.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_09160"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.441 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=7e-48 ;
Q/S_length_ratio=0.990"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.410 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=7e-47 ;
Q/S_length_ratio=0.681"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DIV6|L0DIV6_SINAD ;
ALN/Q_length_ratio=0.262 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4570 PE=4 SV=1 ; EVALUE=9e-47 ;
Q/S_length_ratio=1.211"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.347 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=1e-46 ;
Q/S_length_ratio=1.906"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.418 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=3e-45 ;
Q/S_length_ratio=1.434"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.411 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=4e-45 ;
Q/S_length_ratio=1.221"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.518 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=2e-44 ;
Q/S_length_ratio=0.552"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.334 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=8e-43 ;
Q/S_length_ratio=1.261"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.484 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=3e-42 ;
Q/S_length_ratio=1.214"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.513 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=6e-42 ;
Q/S_length_ratio=1.379"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.428 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=3e-41 ;
Q/S_length_ratio=1.086"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.536 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=3e-41 ;
Q/S_length_ratio=1.003"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0D9N2|L0D9N2_SINAD ;
ALN/Q_length_ratio=0.962 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1558 PE=4 SV=1 ; EVALUE=6e-40 ;
Q/S_length_ratio=0.677"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.434 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=1.018"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.510 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=6e-38 ;
Q/S_length_ratio=1.063"
/note="Pfam_scan:hit_1 (43..116);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:62; HMM_Length:71;
EVALUE:2.2e-09; BITSCORE: 36.7"
/note="Pfam_scan:hit_2 (136..189);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:1.1e-13; BITSCORE: 50.3"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTNSRHGQLG RRLREIVADD ARSDGQLLES YVHCHDAASF ATLVRRHGPM VWGVCRRLLG
61 DHHDAEDAFQ ATFLVLVGRP DAVVPRSRVA GWLYGVAYKI ALKARGRTCR RRTRERLGLE
121 LPEPVAPVET DWSDLRPVLD RELSRLPERY RDAVLLCDVA GETYADAARR LGCPEGTLAA
181 RLSRGRALLA ARLSRRGIAL TVSALAAALP VAAEAGVPPS RVRSRTVDIA ELVMSGGAAP
241 TRVAALAHVG LKALVLSGYR SAVAGVFLLA ALVGGATADP PAPARSPLPA APAPRPVTPR
301 EGLILLTSFA ADDAVELFKP DGTPARRPSV GELSGLWRPQ YSPDGNRLAV AAIAATPQGS
361 GPWSRNDLYI LNLDSKNGPG EPLVADARCL SFAWHPDGTK LFVSHLPSDK ANDSIDPDKV
421 APVRTWMFDL KTGKKTPLEV PEGHNVVDVS PDGKRLLTVT TTLKGIYPGQ TYLVPIGAPK
481 ARLLTEARFS GLRFSPDGKS VLGLRIELKD RNPPELTLAV LAVADGSEQV VELPKNATGV
541 YHACWSPDGR RVAFHWLEEV PLDPNAPPPV GDARGYAGRV TIADRDGSNP KTILISDGKR
601 TISGLDWK
//