LOCUS VTR97009.1 567 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana integrase-recombinase protein : Marine
sediment metagenome DNA, contig: S06H3_L02821 (Fragment)
OS=marine sediment metagenome GN=S06H3_17168 PE=4 SV=1:
Phage_integrase protein.
ACCESSION LR593886-6080
PROTEIN_ID VTR97009.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_09350"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|X1LRV7|X1LRV7_9ZZZZ ;
ALN/Q_length_ratio=0.459 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S06H3_L02821 (Fragment) OS=marine
sediment metagenome GN=S06H3_17168 PE=4 SV=1 ;
EVALUE=1e-35 ; Q/S_length_ratio=2.077"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5TYC8|M5TYC8_9PLAN ;
ALN/Q_length_ratio=0.679 ;
DESCRIPTION=Integrase-recombinase protein
OS=Rhodopirellula sallentina SM41 GN=RSSM_04495 PE=4 SV=1
; EVALUE=1e-29 ; Q/S_length_ratio=1.350"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5TZQ5|M5TZQ5_9PLAN ;
ALN/Q_length_ratio=0.797 ;
DESCRIPTION=Integrase-recombinase protein
OS=Rhodopirellula sallentina SM41 GN=RSSM_03803 PE=4 SV=1
; EVALUE=1e-28 ; Q/S_length_ratio=1.101"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5TSZ5|M5TSZ5_9PLAN ;
ALN/Q_length_ratio=0.802 ; DESCRIPTION=Site-specific
recombinase, phage integrase family protein
OS=Rhodopirellula sallentina SM41 GN=RSSM_06380 PE=4 SV=1
; EVALUE=6e-28 ; Q/S_length_ratio=1.070"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DJ84|L0DJ84_SINAD ;
ALN/Q_length_ratio=0.404 ; DESCRIPTION=Site-specific
recombinase XerD OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_4560
PE=4 SV=1 ; EVALUE=8e-28 ; Q/S_length_ratio=1.465"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|X0SNN7|X0SNN7_9ZZZZ ;
ALN/Q_length_ratio=0.459 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_L00378 OS=marine sediment
metagenome GN=S01H1_04139 PE=4 SV=1 ; EVALUE=2e-27 ;
Q/S_length_ratio=2.011"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5R6X7|M5R6X7_9PLAN ;
ALN/Q_length_ratio=0.802 ; DESCRIPTION=Integrase,
catalytic core, phage domain protein OS=Rhodopirellula
maiorica SM1 GN=RMSM_07826 PE=4 SV=1 ; EVALUE=7e-25 ;
Q/S_length_ratio=1.068"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q7UJ13|Q7UJ13_RHOBA ;
ALN/Q_length_ratio=0.788 ; DESCRIPTION=Probable
integrase-recombinase protein OS=Rhodopirellula baltica
(strain SH1) GN=RB12202 PE=4 SV=1 ; EVALUE=8e-23 ;
Q/S_length_ratio=1.048"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5U9Y1|M5U9Y1_9PLAN ;
ALN/Q_length_ratio=0.854 ;
DESCRIPTION=Integrase-recombinase protein
OS=Rhodopirellula sallentina SM41 GN=RSSM_00409 PE=4 SV=1
; EVALUE=8e-20 ; Q/S_length_ratio=1.038"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M2AG18|M2AG18_9PLAN ;
ALN/Q_length_ratio=0.617 ; DESCRIPTION=Site-specific
recombinase, phage integrase family protein (Fragment)
OS=Rhodopirellula europaea 6C GN=RE6C_03211 PE=4 SV=1 ;
EVALUE=1e-19 ; Q/S_length_ratio=1.344"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|X1UF95|X1UF95_9ZZZZ ;
ALN/Q_length_ratio=0.393 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S12H4_S13206 (Fragment) OS=marine
sediment metagenome GN=S12H4_44744 PE=4 SV=1 ;
EVALUE=1e-19 ; Q/S_length_ratio=2.215"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|X1W0L9|X1W0L9_9ZZZZ ;
ALN/Q_length_ratio=0.314 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S12H4_S21053 (Fragment) OS=marine
sediment metagenome GN=S12H4_55283 PE=4 SV=1 ;
EVALUE=3e-19 ; Q/S_length_ratio=2.908"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A090KMF3|A0A090KMF3_9BACT ;
ALN/Q_length_ratio=0.533 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-18 ;
Q/S_length_ratio=0.913"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M2AY01|M2AY01_9PLAN ;
ALN/Q_length_ratio=0.446 ; DESCRIPTION=Transcriptional
regulator OS=Rhodopirellula europaea 6C GN=RE6C_01643 PE=4
SV=1 ; EVALUE=1e-17 ; Q/S_length_ratio=0.782"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5SU81|M5SU81_9PLAN ;
ALN/Q_length_ratio=0.432 ; DESCRIPTION=Tyrosine
recombinase XerD OS=Rhodopirellula sp. SWK7 GN=RRSWK_06961
PE=4 SV=1 ; EVALUE=1e-17 ; Q/S_length_ratio=1.235"
/note="Pfam_scan:hit_1 (281..462);
Pfam:PF00589.17:Phage_integrase;
Pfam_type:Family;HMM_aln_Length:165; HMM_Length:173;
EVALUE:9e-15; BITSCORE: 54.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0006259"
BEGIN
1 MASLFKPTRP YPLPTNPEIV EKDGKPHVRL KERGKSVLYP VSENGKQYLK PSAKWAADVR
61 FADGRRKRVR FSPNRDASAV MLADLLKKIE NEKAGVVDRF GDHRKRPLSE HLNDWLGSLR
121 ANGRDTEYVT LKASRVRAVF EGCKWVFPGD MIADRLETFL ADSRANRPIL PAIPSKTEWF
181 TVSEVGRLLG DVGAQAVAAL VRRHRLSAQG NGRARRFPLE TVKSLRELRN HGCSSQTSNH
241 WLQTVRQFAR WMVANSRFDR DPFTRLKPMN VNLDLRRRRG ELSPNEFHSL LAAASRSVTE
301 VRGLTGADRA MLYRVAVGTG LRASELAALV PSFFSLDASP PVVILPAEYT KNRKGATQPL
361 SAALVADLRV YLGDRPGKTA VWPGNWFEKA ADMLRIDLAA AGVPVEIDGP EGIETRDFHA
421 LRSVYISNVI RAGADLKQVM TLARHSDPKL TASRYARTRL HDLGSVVDKL PESTVQPPLP
481 TVLRLTGTDA VGTIPEQSGA AEGGSRQLRL RTDEDLPHCS VGTQQSINSL DLQGIGANRE
541 HLSVNGEVPS ARIERATPGL GNQCSIP
//