LOCUS VTR96857.1 872 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2:
CarboxypepD_reg: HEAT_PBS: HEAT_2 protein.
ACCESSION LR593886-6004
PROTEIN_ID VTR96857.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_10110"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.318 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=3e-47 ;
Q/S_length_ratio=0.752"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.682 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=8e-47 ;
Q/S_length_ratio=0.791"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.320 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=1e-43 ;
Q/S_length_ratio=1.574"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.487 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-42 ;
Q/S_length_ratio=0.711"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.334 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=4e-41 ;
Q/S_length_ratio=1.557"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.326 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=5e-41 ;
Q/S_length_ratio=1.977"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.343 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-40 ;
Q/S_length_ratio=1.741"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.329 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=7e-40 ;
Q/S_length_ratio=1.420"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.326 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=0.976"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.229 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=8e-38 ;
Q/S_length_ratio=1.461"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.240 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=1.809"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DCW6|L0DCW6_SINAD ;
ALN/Q_length_ratio=0.219 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2795 PE=4 SV=1 ; EVALUE=8e-37 ;
Q/S_length_ratio=2.265"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.292 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=2.057"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.231 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=2.734"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.276 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.524"
/note="Pfam_scan:hit_1 (38..103);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:62; HMM_Length:71;
EVALUE:6.9e-09; BITSCORE: 35.1"
/note="Pfam_scan:hit_2 (129..182);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:5.3e-08; BITSCORE: 32.2"
/note="Pfam_scan:hit_3 (440..524);
Pfam:PF13620.1:CarboxypepD_reg;
Pfam_type:Domain;HMM_aln_Length:74; HMM_Length:82;
EVALUE:3.3e-08; BITSCORE: 33.4"
/note="Pfam_scan:hit_4 (758..785);
Pfam:PF03130.11:HEAT_PBS;
Pfam_type:Repeat;HMM_aln_Length:24; HMM_Length:27;
EVALUE:0.024; BITSCORE: 15.0"
/note="Pfam_scan:hit_5 (810..872); Pfam:PF13646.1:HEAT_2;
Pfam_type:Family;HMM_aln_Length:61; HMM_Length:88;
EVALUE:8.6e-10; BITSCORE: 38.7"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MLARFASALT RASAPTETDT DLLTSFVRNR DEAAFAALVE RHGPMVMGTC RRILYDSHAA
61 EDAFQAAFLV LARRAASLPR TEALARWMYG VARRVALKTR SARPESLPPQ ETEGRSSDPL
121 DELSGRELLA VLDEEVRRLP SDYRLPVVLC CLEGLTLEEA AARLGCATGA LRGRLERGRT
181 RLRARLSARG LAPAAVLALA GVSRITMAST VTPGLRALTA RAALNFASRT GPVPDGPRRI
241 AESTLGAVFA AKFKRAAVVL IAVVLAVPVF AGPRTVDAPA PEEHAAVKVT PGEEPKEQPA
301 RTTVTGRVLS APGGKGVAGV VVTLWNGEGW GASPSRWTAR TDEEGAYSFA NVLPGEHHRV
361 WIEECPRKGT GAGFKNKAIG LGSTDADPRR DERPGEPNAY EKWIEVRSHK DVGTWSEWAR
421 VQFKDRAGRA EDLFIELPQS VSGTVIDADT GKPVPGASLN FPTADGNRDG LITDADGRYR
481 LFVAPRKIDI YCNGTAVRYN KADQPQTVDV SADKHVAGID FKIASAPKFT GQVLLPDGKL
541 AKGVEVVVEV RCTPLNVPPG GGVYDGFDRS IHLTSDAEGN FTGHMVGARP NSNVRVVGLL
601 AIARRPDRTF SGVASVRTSP QDGYRVDPLK IVLAEPASAR VRVLNPDGEP ITNANMVLSH
661 HPPRDADQTN IVYASGSSDQ HGPVKHTGAG KYTIAGLVPG LTYSLEVRAP GYQLGNHSKT
721 FVLKSGEIHE IGEIRLDWWG KKAVPGLLKK LQGDRYNREE AARQFGELGA DAAEAVPALI
781 EVLKRDPINS VRYEAAAALG KIGPGALAAV PDLIQSLQED AGGGVQREAA TALGLLGDRS
841 ALPALKVALD HQDNEVKRAA TEAIKRLERP KK
//