LOCUS VTR96689.1 188 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-e factor : RNA
polymerase sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
sp. SWK7 GN=RRSWK_02250 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-5920
PROTEIN_ID VTR96689.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_10950"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|M5TIA6|M5TIA6_9PLAN ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula sp.
SWK7 GN=RRSWK_02250 PE=4 SV=1 ; EVALUE=3e-50 ;
Q/S_length_ratio=0.979"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5UBX1|M5UBX1_9PLAN ;
ALN/Q_length_ratio=0.888 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
sallentina SM41 GN=RSSM_03163 PE=4 SV=1 ; EVALUE=1e-48 ;
Q/S_length_ratio=0.870"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5RNZ9|M5RNZ9_9PLAN ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula maiorica SM1
GN=RMSM_02030 PE=4 SV=1 ; EVALUE=2e-48 ;
Q/S_length_ratio=0.964"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F2AKJ6|F2AKJ6_RHOBT ;
ALN/Q_length_ratio=0.915 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula baltica WH47
GN=RBWH47_00968 PE=4 SV=1 ; EVALUE=7e-46 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M2ACE2|M2ACE2_9PLAN ;
ALN/Q_length_ratio=0.915 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula europaea 6C GN=RE6C_04957
PE=4 SV=1 ; EVALUE=8e-46 ; Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5S9R0|M5S9R0_9PLAN ;
ALN/Q_length_ratio=0.915 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula europaea SH398
GN=RESH_01186 PE=4 SV=1 ; EVALUE=1e-45 ;
Q/S_length_ratio=0.949"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L7CN71|L7CN71_RHOBT ;
ALN/Q_length_ratio=0.915 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_01077 PE=4 SV=1 ; EVALUE=2e-45 ;
Q/S_length_ratio=0.814"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q7UPG3|Q7UPG3_RHOBA ;
ALN/Q_length_ratio=0.915 ; DESCRIPTION=Probable RNA
polymerase sigma-E factor (ECF subfamily of sigma-70)
OS=Rhodopirellula baltica (strain SH1) GN=RB6961 PE=4 SV=1
; EVALUE=2e-45 ; Q/S_length_ratio=0.814"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|K5CF58|K5CF58_RHOBT ;
ALN/Q_length_ratio=0.915 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica SH28 GN=RBSH_02164 PE=4 SV=1 ; EVALUE=2e-45 ;
Q/S_length_ratio=0.814"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5SC14|M5SC14_9PLAN ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula europaea SH398
GN=RESH_05740 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=0.858"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|Q7UJX5|Q7UJX5_RHOBA ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=Probable
RNA-polymerase sigma-E factor OS=Rhodopirellula baltica
(strain SH1) GN=sigG PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.787"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F2AV77|F2AV77_RHOBT ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula baltica WH47
GN=RBWH47_01732 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.787"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L7CBY8|L7CBY8_RHOBT ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_04900 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=0.787"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M2B9D6|M2B9D6_9PLAN ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula europaea 6C GN=RE6C_00575
PE=4 SV=1 ; EVALUE=3e-36 ; Q/S_length_ratio=0.787"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|K5DAG4|K5DAG4_RHOBT ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula baltica SH28
GN=RBSH_00856 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=0.787"
/note="Pfam_scan:hit_1 (14..87);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:65; HMM_Length:71;
EVALUE:1.3e-06; BITSCORE: 27.8"
/note="Pfam_scan:hit_2 (128..180);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:3.4e-12; BITSCORE: 45.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MDRPPEEAGA LLEPFRAYLR LLARLHLAPQ LRGKLDPSDV VQQALLQAYQ ALDQFRGRSP
61 AECAAWLRQI LARNLAQAVR DFGRDKRDVA RERALGASVD ASSERLEAWL AADQSSPSAR
121 AVRGEQVLRL ADALERLPEA QREALVLQHW HGLSLAEIGT HLGRSPDAVA GLIKRGLKQL
181 RHLLRESE
//