LOCUS VTR96631.1 1254 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana dna-directed rna polymerase subunit
beta : DNA-directed RNA polymerase subunit beta OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=rpoB PE=3 SV=1: RNA_pol_Rpb2_1: RNA_pol_Rpb2_2:
RNA_pol_Rpb2_3: RNA_pol_Rpb2_45: RNA_pol_Rpb2_6: RNA_pol_Rpb2_7
protein.
ACCESSION LR593886-5891
PROTEIN_ID VTR96631.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_11240"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0SII2|F0SII2_PLABD ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.013"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D2R5N8|D2R5N8_PIRSD ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Pirellula staleyi (strain ATCC
27377 / DSM 6068 / ICPB 4128) GN=rpoB PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.011"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5U9J7|M5U9J7_9PLAN ;
ALN/Q_length_ratio=0.969 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Rhodopirellula sallentina SM41
GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.029"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5TK52|M5TK52_9PLAN ;
ALN/Q_length_ratio=0.988 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Rhodopirellula sp. SWK7 GN=rpoB
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.012"
/note="BLAST_uniprot:hit_7 ; ACCESSION=Q7URW6 ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Rhodopirellula baltica (strain
SH1) GN=rpoB PE=3 SV=2 ; EVALUE=0.0 ;
Q/S_length_ratio=1.011"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A6CA60|A6CA60_9PLAN ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Planctomyces maris DSM 8797
GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.013"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5SEG6|M5SEG6_9PLAN ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Rhodopirellula europaea SH398
GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.999"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|D5SPR3|D5SPR3_PLAL2 ;
ALN/Q_length_ratio=0.985 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=rpoB
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.013"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K5DCI6|K5DCI6_RHOBT ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Rhodopirellula baltica SH28
GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.994"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M2ARH2|M2ARH2_9PLAN ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Rhodopirellula europaea 6C
GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.999"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8R5G1|E8R5G1_ISOPI ;
ALN/Q_length_ratio=0.980 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Isosphaera pallida (strain ATCC
43644 / DSM 9630 / IS1B) GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A3ZLH8|A3ZLH8_9PLAN ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Blastopirellula marina DSM 3645
GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|F2ASB1|F2ASB1_RHOBT ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Rhodopirellula baltica WH47
GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.994"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L7C833|L7C833_RHOBT ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Rhodopirellula baltica SWK14
GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.011"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D8I7|L0D8I7_SINAD ;
ALN/Q_length_ratio=0.979 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=rpoB PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.015"
/note="Pfam_scan:hit_1 (28..468);
Pfam:PF04563.10:RNA_pol_Rpb2_1;
Pfam_type:Family;HMM_aln_Length:201; HMM_Length:203;
EVALUE:4.7e-21; BITSCORE: 74.6"
/note="Pfam_scan:hit_2 (294..413);
Pfam:PF04561.9:RNA_pol_Rpb2_2;
Pfam_type:Domain;HMM_aln_Length:92; HMM_Length:190;
EVALUE:1.2e-19; BITSCORE: 70.5"
/note="Pfam_scan:hit_3 (472..541);
Pfam:PF04565.11:RNA_pol_Rpb2_3;
Pfam_type:Domain;HMM_aln_Length:66; HMM_Length:68;
EVALUE:3.2e-27; BITSCORE: 94.0"
/note="Pfam_scan:hit_4 (550..614);
Pfam:PF10385.4:RNA_pol_Rpb2_45;
Pfam_type:Domain;HMM_aln_Length:65; HMM_Length:66;
EVALUE:5.1e-14; BITSCORE: 51.8"
/note="Pfam_scan:hit_5 (620..1174);
Pfam:PF00562.23:RNA_pol_Rpb2_6;
Pfam_type:Domain;HMM_aln_Length:384; HMM_Length:386;
EVALUE:8.8e-159; BITSCORE: 528.3"
/note="Pfam_scan:hit_6 (1176..1252);
Pfam:PF04560.15:RNA_pol_Rpb2_7;
Pfam_type:Domain;HMM_aln_Length:80; HMM_Length:82;
EVALUE:1.1e-26; BITSCORE: 92.8"
/note="GO_domain:GO:0044281"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0016779"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0005730"
/note="Enzyme_Code:EC:2.7.7.6"
BEGIN
1 MPIPAQRIIT PDTVRNFGRF GDAVDVPDLT DVQTRSYDRF LQLDASYDRR THTGLEGVLQ
61 EIFPIESYDK RISLEYLRYE LGKPRYDADE CRQLRLTYGR PFRVWLRLRK TEGEPVEEEV
121 YLGDMPIMIG GGEFIINGAE RVVVSQLHRS PGVDFVVTRE ADKDLHSCRI IPERGSWIEI
181 NATKKDTLGV RIDQSGKFSA VTLLRAMDPA YSTTESILKE FFGGAIETVK LNAKEARGKL
241 VGDPDANVMP YIAVEDVIDP ENGEVYLDAG KPFTSDKFDK ISVTQVGSVQ VMPYPKDPII
301 LNAIAEDVGA ALDSKDSHEG ALLKIYQRLR PGNPPQLEKA KELFKEKFQD ANRYRLGRVG
361 RFRINRKFDQ NVAETEMTLR SVDFVNSVKY LLDLRAGKGH VDDIDHLGNR RLRTIDELAA
421 DELRKGFLKL RRTVQERMAI RDQQDMSPRS LINPKSVSAA IEYFFGRSEL SQVVDQTNPL
481 AQLTHERRLS ALGPGGLNRK RAGFEVRDVH ISHYGRICPI ETPEGTNIGL ISSLSIYAEI
541 DEYGFLITPY KKVHSKKLTD EVVKLRADEE ADAVLAPADT PTEGDKVTAD RVSGRQSGEL
601 MMIPAEKVEY IDVSPKQMVG VSAGLIPFLE HDDANRALMG SNMQRQAVPL LIPEPPLVST
661 GLEIDVARHS GMLVRAQEDG TVVFVDAERI KLEEKDKIVR EYVLRKYHGL NERTCLNQKP
721 IVRMGQKVKK NEIIADGAAT KSGELALGRN VLVAFMSWEG YNFEDAIIIS ERLVKNDTYT
781 SIHIEEFDIE IRETKLGKEE FTRDIPNVSP KALANLDEHG VVQIGTYVRP GDILVGKVSP
841 KSRSELTPEE KLLHAIFGRA GEDVKNDSLE VQSGTEGLVI AAHRFSRRAH MTEDEKKQID
901 KERKDIETQF NKKIAEQFRE FVKALEEVLD KKELKDPNTG KQLASDKDDK VVAEQAKEFK
961 LEKLDIRTPD SQKKAHKIYG RHWERIQFFI DEQERKLNSL NRGDELPSGV QQMVKVYVAT
1021 KRVISVGDKM AGRHGNKGVI SKVLPEEDMP FLKDGTPVDI LLNPLGVPSR MNVGQILETH
1081 LGYAAAKLKF KAVTPVFDGA TEDEIKSSLE EAGIPTTGKS VLYDGRTGEA FDQPVTVGYI
1141 YMLKLHHLVD DKVHARATGP YSLITQQPLG GKARFGGQRF GEMEVWALEA YGAAYILQEL
1201 LTVKSDDVEG RTKIYESMVK GENTLEAGTP ASFDVLTHEI RGLGLNMCLE KKRV
//