LOCUS VTR96629.1 1466 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana dna-directed rna polymerase subunit
beta : DNA-directed RNA polymerase subunit beta' OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=rpoC PE=3 SV=1: RNA_pol_Rpb1_1: RNA_pol_Rpb1_2:
RNA_pol_Rpb1_3: RNA_pol_Rpb1_4: RNA_pol_Rpb1_5 protein.
ACCESSION LR593886-5890
PROTEIN_ID VTR96629.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_11250"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5RKD2|M5RKD2_9PLAN ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Rhodopirellula maiorica SM1
GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=0.994"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D5SQ69|D5SQ69_PLAL2 ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=rpoC
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.027"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M2B0L0|M2B0L0_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Rhodopirellula europaea 6C
GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.026"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SII1|F0SII1_PLABD ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.008"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A3ZLH7|A3ZLH7_9PLAN ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Blastopirellula marina DSM
3645 GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=0.992"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F2ASA9|F2ASA9_RHOBT ;
ALN/Q_length_ratio=0.910 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Rhodopirellula baltica WH47
GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.065"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5RZ41|M5RZ41_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Rhodopirellula europaea SH398
GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.026"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5U929|M5U929_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Rhodopirellula sallentina SM41
GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.027"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|K5CB17|K5CB17_RHOBT ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Rhodopirellula baltica SH28
GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.026"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L7C9P0|L7C9P0_RHOBT ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Rhodopirellula baltica SWK14
GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.026"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8QWY9|E8QWY9_ISOPI ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Isosphaera pallida (strain
ATCC 43644 / DSM 9630 / IS1B) GN=rpoC PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.019"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5T9K5|M5T9K5_9PLAN ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Rhodopirellula sp. SWK7
GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.027"
/note="BLAST_uniprot:hit_11 ; ACCESSION=Q7URW4 ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Rhodopirellula baltica (strain
SH1) GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.026"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|D2R5N7|D2R5N7_PIRSD ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Pirellula staleyi (strain ATCC
27377 / DSM 6068 / ICPB 4128) GN=rpoC PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.013"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D6B1|L0D6B1_SINAD ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=DNA-directed RNA
polymerase subunit beta' OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=rpoC PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.027"
/note="Pfam_scan:hit_1 (22..359);
Pfam:PF04997.7:RNA_pol_Rpb1_1;
Pfam_type:Domain;HMM_aln_Length:334; HMM_Length:337;
EVALUE:6.1e-91; BITSCORE: 305.1"
/note="Pfam_scan:hit_2 (361..503);
Pfam:PF00623.15:RNA_pol_Rpb1_2;
Pfam_type:Domain;HMM_aln_Length:165; HMM_Length:166;
EVALUE:7.6e-50; BITSCORE: 169.0"
/note="Pfam_scan:hit_3 (506..676);
Pfam:PF04983.13:RNA_pol_Rpb1_3;
Pfam_type:Domain;HMM_aln_Length:156; HMM_Length:158;
EVALUE:3.6e-17; BITSCORE: 62.5"
/note="Pfam_scan:hit_4 (705..795);
Pfam:PF05000.12:RNA_pol_Rpb1_4;
Pfam_type:Domain;HMM_aln_Length:106; HMM_Length:108;
EVALUE:6.7e-16; BITSCORE: 57.9"
/note="Pfam_scan:hit_5 (797..1337);
Pfam:PF04998.12:RNA_pol_Rpb1_5;
Pfam_type:Domain;HMM_aln_Length:253; HMM_Length:277;
EVALUE:3.7e-62; BITSCORE: 210.1"
/note="GO_domain:GO:0044281"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0016779"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0005730"
/note="Enzyme_Code:EC:2.7.7.6"
BEGIN
1 MSTAANNNKN ADASEGTSYE RINDFGAVRI SLASPQDIHS WSHGEVKKPE TINYRTYRPE
61 KDGLFCEKIF GPEKDWECSC GKYRGMKYKG MICDRCGVKV THSRVRRKRM GHIQLAAHVV
121 HIWFFKAMPS RLGTLLDMKT TNLEKIIYFQ DYVVINPGDT EVTKLKEREL LNEEQYKEKR
181 GEHGDMFEVD MGAEAIKKLL ERLDLVKLSV DLRERLDKEV ARGEKKSKQR EKELVKRLKT
241 VEALRDSSNK CEWMVLECIP VIPPDLRPLV LLDSGNFATS DLNDLYRRII NRNNRLKKLV
301 DLNAPEVIIR NEKRMLQQSV DALFDNNRCK RPVLGSSNRP LKSLTDMIKG KQGRFRENLL
361 GKRVDYSARS VIVVGPELKL HQCGLPKKIA LELFQPFIIR RLKELNHADT IKSAKKMLER
421 KDDVVWDILE EVTRSHPVML NRAPTLHRMG IQAFEPVLIE GNAIRIHPLV CKGFNADFDG
481 DQMAVHLPLS IEAQVEATVL MMSTNNIFSP ANGNPIITPS QDIVMGCYYL TASRGAEDEA
541 VEAGDGMVFH SPLELFRAHA EHKLGMHAKV RVRMPIEKKV ISEVKDEKGN PRAEELPRKP
601 NGLVRTTVGR VIFNDILHPK MAFYDLPLSS KHLSRIIADC YQVLGRRETI SLLDRMKETG
661 FRQATRSGLS FAASDLRTPD NKEGVLKDKD KEVEKVRKNF DRGIITETER YNKVIDLWME
721 ARDLITKKMM TDLRDDRRKD QVTGKEVPYL NPIYLMAHSG ARGGIEQIRQ LAGMRGLMAK
781 PSGAIIETPI KSNFREGLTV LEYFSSTHGA RKGLADTALK TADSGYLTRK LADVAQNVVI
841 TMHDCGTTKG ISKGVMYKGD EIDRSLSDAI RGRVSRNSIP NPTTGSEILA ENEMITPGKA
901 KELEKLGIDK ITVRSPMTCE APLGVCRLCY GMDLATGSIV EDGMAVGIIA AQSIGEPGTQ
961 LTMRTFHIGG AAQSRGNVGD NEHKTKKGGI VQFERITVVT NDEGKNIALA PRTGEVVIIR
1021 GKDIAERYGV PHGAELLVTE GQEVPATTAL VRWDPHSVPL IAEDSGIVRF KDIKEGVTVR
1081 REIDRATGVE RLTIMEHKGD LHPQIIVETG KGKDDRVYYI HERANLQVVN GQKVSAGSML
1141 AKTPREVSQT QDITGGLPRV TELFEARRPR NPAVMAEVAG RVRIDPTRKR GKRIIEVIQE
1201 TEDGKSLGSA REHLVPASAH VRVHPSEYVK EGDPLVHGPL VPHDILKIRG EQEVQEYLVR
1261 EVQSVYRSQR VDIDDKHIEI IVAQMLRKVK VTRTGDTGLL PGAVMDKFAF DEVNRRLTEE
1321 CVKVVNAGDT TLVAGRVYSR EAFEEERVLI EKDKKKQQPT FTTPEPADRE VQLLGITKAA
1381 VQSDSFISAA SFQETTKVLT EAALASKVDY LVGLKENVIL GHLIPAGTGF KTHQEAEVKI
1441 NAPGGGAPAP MLAPADVPPA PESTGA
//