LOCUS VTR96528.1 185 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma-24 ecf subfamily : RNA polymerase
sigma factor OS=Planctomyces maris DSM 8797 GN=PM8797T_17979
PE=3 SV=1: Sigma70_r2: Sigma70_r4_2 protein.
ACCESSION LR593886-5829
PROTEIN_ID VTR96528.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_11860"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A6C5B1|A6C5B1_9PLAN ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=RNA polymerase
sigma factor OS=Planctomyces maris DSM 8797
GN=PM8797T_17979 PE=3 SV=1 ; EVALUE=6e-53 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DLE1|L0DLE1_SINAD ;
ALN/Q_length_ratio=0.935 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5522 PE=4 SV=1 ; EVALUE=4e-51 ;
Q/S_length_ratio=1.045"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A3ZNJ6|A3ZNJ6_9PLAN ;
ALN/Q_length_ratio=0.924 ; DESCRIPTION=Probable RNA
polymerase sigma factor sigW OS=Blastopirellula marina DSM
3645 GN=DSM3645_17105 PE=4 SV=1 ; EVALUE=4e-48 ;
Q/S_length_ratio=0.925"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|E8R6K7|E8R6K7_ISOPI ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=RNA polymerase
sigma factor OS=Isosphaera pallida (strain ATCC 43644 /
DSM 9630 / IS1B) GN=Isop_2341 PE=3 SV=1 ; EVALUE=5e-45 ;
Q/S_length_ratio=0.849"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|D2R848|D2R848_PIRSD ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_4738
PE=4 SV=1 ; EVALUE=1e-44 ; Q/S_length_ratio=0.698"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F0SHL3|F0SHL3_PLABD ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_0828 PE=4 SV=1 ;
EVALUE=4e-40 ; Q/S_length_ratio=0.989"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5RKK3|M5RKK3_9PLAN ;
ALN/Q_length_ratio=0.930 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily (Fragment)
OS=Rhodopirellula maiorica SM1 GN=RMSM_03246 PE=4 SV=1 ;
EVALUE=5e-34 ; Q/S_length_ratio=0.969"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|D5SQ49|D5SQ49_PLAL2 ;
ALN/Q_length_ratio=0.989 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces limnophilus
(strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)
GN=Plim_2600 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=0.860"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M2A9X2|M2A9X2_9PLAN ;
ALN/Q_length_ratio=0.849 ; DESCRIPTION=Protein containing
RNA polymerase sigma-70 domain protein OS=Rhodopirellula
europaea 6C GN=RE6C_00184 PE=4 SV=1 ; EVALUE=4e-28 ;
Q/S_length_ratio=0.974"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5SAI6|M5SAI6_9PLAN ;
ALN/Q_length_ratio=0.849 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula europaea SH398
GN=RESH_00904 PE=4 SV=1 ; EVALUE=4e-28 ;
Q/S_length_ratio=0.974"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5TM11|M5TM11_9PLAN ;
ALN/Q_length_ratio=0.914 ; DESCRIPTION=RNA polymerase
sigma-70 OS=Rhodopirellula sp. SWK7 GN=RRSWK_02879 PE=4
SV=1 ; EVALUE=8e-28 ; Q/S_length_ratio=0.468"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|F2APG8|F2APG8_RHOBT ;
ALN/Q_length_ratio=0.849 ; DESCRIPTION=Secreted protein
containing RNA polymerase sigma-70 domain
OS=Rhodopirellula baltica WH47 GN=RBWH47_00624 PE=4 SV=1 ;
EVALUE=3e-27 ; Q/S_length_ratio=0.969"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|G0V404|G0V404_9CLOT ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Caloramator australicus
RC3 GN=CAAU_0195 PE=4 SV=1 ; EVALUE=3e-27 ;
Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|K5DZU4|K5DZU4_RHOBT ;
ALN/Q_length_ratio=0.849 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula baltica
SH28 GN=RBSH_05684 PE=4 SV=1 ; EVALUE=4e-27 ;
Q/S_length_ratio=0.969"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L7CGX6|L7CGX6_RHOBT ;
ALN/Q_length_ratio=0.849 ; DESCRIPTION=Secreted protein
containing RNA polymerase sigma-70 domain protein
OS=Rhodopirellula baltica SWK14 GN=RBSWK_02594 PE=4 SV=1 ;
EVALUE=4e-27 ; Q/S_length_ratio=0.969"
/note="Pfam_scan:hit_1 (9..90); Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:4.8e-16; BITSCORE: 58.1"
/note="Pfam_scan:hit_2 (113..166);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:54;
EVALUE:2.6e-14; BITSCORE: 52.3"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSADAALVKR CLTGCPASAR ELVERFQSDV LAVCRRLLAS EHDAEDVAQE VFIRVFRSMS
61 RWDGERPLRP WILGIAVNRC RTWIGKRART PSLADYLDDA PDRKPTDDSA ELAGELRTAV
121 DGLRHEYREV FVLFHEHGQP YEEIAGVVGR PVGTVKTWLH RARLEILDRL RSRGLVPEEE
181 VPKTP
//