LOCUS VTR96493.1 288 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana trna pseudouridine synthase b : tRNA
pseudouridine synthase B OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401
/ IFAM 1448) GN=truB PE=3 SV=1: TruB_N: TruB-C_2 protein.
ACCESSION LR593886-5794
PROTEIN_ID VTR96493.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_12210"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|F0SNV3|F0SNV3_PLABD ;
ALN/Q_length_ratio=0.983 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Planctomyces brasiliensis (strain ATCC 49424
/ DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) GN=truB
PE=3 SV=1 ; EVALUE=1e-71 ; Q/S_length_ratio=0.929"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DKK6|L0DKK6_SINAD ;
ALN/Q_length_ratio=0.868 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Singulisphaera acidiphila (strain ATCC
BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=truB PE=3
SV=1 ; EVALUE=7e-71 ; Q/S_length_ratio=0.950"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A4A2R8|A4A2R8_9PLAN ;
ALN/Q_length_ratio=0.941 ; DESCRIPTION=tRNA pseudouridine
synthase B (Fragment) OS=Blastopirellula marina DSM 3645
GN=DSM3645_06384 PE=3 SV=1 ; EVALUE=6e-69 ;
Q/S_length_ratio=1.029"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|E8T1X7|E8T1X7_THEA1 ;
ALN/Q_length_ratio=0.955 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Thermovibrio ammonificans (strain DSM 15698
/ JCM 12110 / HB-1) GN=truB PE=3 SV=1 ; EVALUE=4e-67 ;
Q/S_length_ratio=1.018"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|E8R4P3|E8R4P3_ISOPI ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Isosphaera pallida (strain ATCC 43644 / DSM
9630 / IS1B) GN=truB PE=3 SV=1 ; EVALUE=5e-66 ;
Q/S_length_ratio=0.881"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A6C3H8|A6C3H8_9PLAN ;
ALN/Q_length_ratio=1.017 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Planctomyces maris DSM 8797 GN=truB PE=3
SV=1 ; EVALUE=1e-65 ; Q/S_length_ratio=0.929"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|E3I507|E3I507_RHOVT ;
ALN/Q_length_ratio=1.031 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Rhodomicrobium vannielii (strain ATCC 17100
/ ATH 3.1.1 / DSM 162 / LMG 4299) GN=truB PE=3 SV=1 ;
EVALUE=3e-65 ; Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|E0XQB5|E0XQB5_9GAMM ;
ALN/Q_length_ratio=1.003 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=uncultured gamma proteobacterium
HF0010_01E20 GN=truB PE=3 SV=1 ; EVALUE=1e-63 ;
Q/S_length_ratio=0.947"
/note="BLAST_uniprot:hit_10 ; ACCESSION=Q4UWA0 ;
ALN/Q_length_ratio=1.007 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=truB PE=3 SV=1 ; EVALUE=6e-63 ;
Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_9 ; ACCESSION=Q8P7U9 ;
ALN/Q_length_ratio=1.007 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=truB PE=3
SV=1 ; EVALUE=6e-63 ; Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A9WGQ0|A9WGQ0_CHLAA ;
ALN/Q_length_ratio=0.948 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Chloroflexus aurantiacus (strain ATCC 29366
/ DSM 635 / J-10-fl) GN=truB PE=3 SV=1 ; EVALUE=8e-63 ;
Q/S_length_ratio=0.993"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|B9LBJ6|B9LBJ6_CHLSY ;
ALN/Q_length_ratio=0.948 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Chloroflexus aurantiacus (strain ATCC 29364
/ DSM 637 / Y-400-fl) GN=truB PE=3 SV=1 ; EVALUE=8e-63 ;
Q/S_length_ratio=0.993"
/note="BLAST_uniprot:hit_14 ; ACCESSION=Q47RU8 ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Thermobifida fusca (strain YX) GN=truB PE=3
SV=1 ; EVALUE=2e-62 ; Q/S_length_ratio=0.983"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|R9F8R3|R9F8R3_THEFU ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Thermobifida fusca TM51 GN=truB PE=3 SV=1 ;
EVALUE=2e-62 ; Q/S_length_ratio=0.983"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|B8EIA5|B8EIA5_METSB ;
ALN/Q_length_ratio=0.997 ; DESCRIPTION=tRNA pseudouridine
synthase B OS=Methylocella silvestris (strain BL2 / DSM
15510 / NCIMB 13906) GN=truB PE=3 SV=1 ; EVALUE=3e-62 ;
Q/S_length_ratio=0.963"
/note="Pfam_scan:hit_1 (23..172); Pfam:PF01509.13:TruB_N;
Pfam_type:Family;HMM_aln_Length:144; HMM_Length:149;
EVALUE:2.8e-49; BITSCORE: 167.1"
/note="Pfam_scan:hit_2 (229..286);
Pfam:PF09157.6:TruB-C_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:58;
EVALUE:2.7e-09; BITSCORE: 36.7"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0016853"
/note="Enzyme_Code:EC:5.4.99.12"
BEGIN
1 MNGLLVIDKP GGMTSRDAVN RVQRWFPRKT KIGHTGTLDP LATGVLVVCI GAATRLADYV
61 QAMGKSYSSR FRFGATSTTD DADGEVTETP NAPVPTREQI DAALAAFVGN VEQVPPAVSA
121 LKLDGVRAHE LVRRGLGPKL NARVVSIYAI RVTGFAWPHL DVEVDCGKGT YIRSIARDLG
181 DVLGCGGLVQ TLRRTRVGPF RVEQGMSLDA DPASVKLLPM AEAVAGMKHV SLNADEVIRL
241 RHGQRIRLSE NNAPPEGEEL AVFDGQTGLI GIGVVERGQL KPQLVFGV
//