LOCUS VTR96256.1 409 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-5557
PROTEIN_ID VTR96256.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_14580"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.660 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=0.666"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.831 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=1e-37 ;
Q/S_length_ratio=0.371"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.746 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=0.715"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.653 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=1e-36 ;
Q/S_length_ratio=0.333"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.814 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=0.458"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.667 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=0.965"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.689 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=5e-33 ;
Q/S_length_ratio=0.730"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.702 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=7e-33 ;
Q/S_length_ratio=0.849"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.465 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=5e-32 ;
Q/S_length_ratio=1.282"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.751 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=3e-31 ;
Q/S_length_ratio=0.353"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.707 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=1e-28 ;
Q/S_length_ratio=0.675"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.724 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=4e-28 ;
Q/S_length_ratio=0.738"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DA12|L0DA12_SINAD ;
ALN/Q_length_ratio=1.068 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_1318 PE=4 SV=1 ; EVALUE=3e-27 ;
Q/S_length_ratio=0.565"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.653 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=4e-27 ;
Q/S_length_ratio=0.429"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DCW6|L0DCW6_SINAD ;
ALN/Q_length_ratio=0.467 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2795 PE=4 SV=1 ; EVALUE=5e-27 ;
Q/S_length_ratio=1.062"
/note="Pfam_scan:hit_1 (34..98);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:6.2e-06; BITSCORE: 25.7"
/note="Pfam_scan:hit_2 (122..175);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:2.8e-12; BITSCORE: 45.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MIRVLRLLRA TAGSDRDLLD RYARDRDEGA FEALVHRYGT GVWAACVRLA GRDAEDAFQA
61 VFLTLSRKAG AVTGSLPAWL HAVTRRVAAN LRRSAQRRSA IESAAARSPD APTDDAGLRE
121 GLALLDEELA HMPERYRTVL IVCCLEGRSR DEAAQQLGWS EGQVKGRLER AREMLRTRLA
181 ERGVELGAVL LAAAVTGPIP VRAGPPSATA VTLSHGVIRA MMFQKLKLTA AVLTAVAGVA
241 IASAMVVRAQ PGTLPNETAK EPASAPREAP EKRVGEAVPQ DKGNPAPKER KDEVPKKIRD
301 LQKERIAALK ELTDTTAALY KNARATYDEA IEARLLLLQA EVDVAEKPAE RLALYQKCVD
361 ELKAYEEVAV ARVQVGRGTN AAVLKIKARR LEVEIQLEQA KAKEAREGK
//