LOCUS VTR96237.1 205 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncharacterized protein OS=Blastopirellula marina
DSM 3645 GN=DSM3645_26594 PE=4 SV=1: Sigma70_r4_2 protein.
ACCESSION LR593886-5538
PROTEIN_ID VTR96237.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_14770"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A3ZY49|A3ZY49_9PLAN ;
ALN/Q_length_ratio=0.990 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_26594 PE=4 SV=1 ; EVALUE=1e-76 ;
Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DGW7|L0DGW7_SINAD ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4435 PE=4 SV=1 ; EVALUE=3e-75 ;
Q/S_length_ratio=0.953"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A3ZSI4|A3ZSI4_9PLAN ;
ALN/Q_length_ratio=0.829 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_14900 PE=4 SV=1 ; EVALUE=9e-15 ;
Q/S_length_ratio=0.976"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DID4|L0DID4_SINAD ;
ALN/Q_length_ratio=0.961 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5005 PE=4 SV=1 ; EVALUE=3e-11 ;
Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A3ZX69|A3ZX69_9PLAN ;
ALN/Q_length_ratio=0.824 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_27758 PE=4 SV=1 ; EVALUE=7e-11 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|F0SLP7|F0SLP7_PLABD ;
ALN/Q_length_ratio=0.732 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_1172 PE=4 SV=1 ;
EVALUE=1e-08 ; Q/S_length_ratio=1.057"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|C7PUM1|C7PUM1_CHIPD ;
ALN/Q_length_ratio=0.766 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Chitinophaga pinensis
(strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034)
GN=Cpin_3555 PE=4 SV=1 ; EVALUE=4e-08 ;
Q/S_length_ratio=1.035"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|F0SMW5|F0SMW5_PLABD ;
ALN/Q_length_ratio=0.839 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=Plabr_2367 PE=4 SV=1 ; EVALUE=3e-07 ;
Q/S_length_ratio=0.981"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A3ZWH9|A3ZWH9_9PLAN ;
ALN/Q_length_ratio=0.746 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_26329 PE=4 SV=1 ; EVALUE=3e-07 ;
Q/S_length_ratio=1.015"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A086PD11|A0A086PD11_SPHHM ;
ALN/Q_length_ratio=0.737 ; DESCRIPTION=ECF-type sigma
factor OS=Sphingobium herbicidovorans (strain ATCC 700291
/ DSM 11019 / NBRC 16415 / MH) GN=BV98_001039 PE=4 SV=1 ;
EVALUE=1e-06 ; Q/S_length_ratio=1.265"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|B1G1J9|B1G1J9_9BURK ;
ALN/Q_length_ratio=0.785 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Burkholderia graminis
C4D1M GN=BgramDRAFT_3194 PE=4 SV=1 ; EVALUE=7e-06 ;
Q/S_length_ratio=1.126"
/note="Pfam_scan:hit_1 (135..188);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:54;
EVALUE:2.6e-10; BITSCORE: 39.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSEEQTTAAV QRYLNELAGD TPAEPVVRAL LDRAVRRLHH LCAALLHRSY PRLTRPPLNL
61 HADEMLGAVV ERLLKALRQA RPGTVRQFFA LACQHMRWEL NDLARRLDEQ PPAPDVDHGI
121 VPAPADSDSA LTPVGRRIIA AIDALPDAER EAFDLVRIQG MTQVEAAAVL GVSAMTVGRR
181 LNSGLQLLAD ALADLAPQGI DADAT
//