LOCUS VTR96198.1 766 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Uncultured bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-5499
PROTEIN_ID VTR96198.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_15160"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.901 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=7e-36 ;
Q/S_length_ratio=0.661"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.376 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=5e-33 ;
Q/S_length_ratio=1.368"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.286 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=6e-33 ;
Q/S_length_ratio=1.248"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.324 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=1.383"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.384 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=0.695"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.273 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=3e-30 ;
Q/S_length_ratio=1.737"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.264 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=6e-30 ;
Q/S_length_ratio=1.807"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.342 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=7e-29 ;
Q/S_length_ratio=0.858"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.394 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=3e-28 ;
Q/S_length_ratio=0.624"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.358 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=5e-27 ;
Q/S_length_ratio=2.401"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DCW6|L0DCW6_SINAD ;
ALN/Q_length_ratio=0.249 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2795 PE=4 SV=1 ; EVALUE=5e-27 ;
Q/S_length_ratio=1.990"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.261 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=5e-26 ;
Q/S_length_ratio=1.721"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.232 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=8e-26 ;
Q/S_length_ratio=1.589"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.359 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=2e-24 ;
Q/S_length_ratio=0.804"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.352 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=4e-24 ;
Q/S_length_ratio=1.091"
/note="Pfam_scan:hit_1 (40..108);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:5.8e-07; BITSCORE: 29.0"
/note="Pfam_scan:hit_2 (134..187);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:7.2e-10; BITSCORE: 38.1"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPTAALRSLL RSATCSDAGT DADLLARFAA DRDERTFAEL VHRHGALVHG TARRIAGDPD
61 AAHDAFQATF LLLARKASAG GWGPTVGPWL YRVACRVAAR ARSRMARRPG HAPVADVPGH
121 APDPGAGLAW ADVRGALDRG LASLPARLRD PLVLCYLEGL TRDEAADALG CSPVVLKGRI
181 ARGRDRLRRA LAGRGITLTA ALSGVLVAGN GVSASAAAEL AQTAVAYQAT RIAPPTVRAL
241 LGASFTGWKL FARVTGLLLA CATVGLAATG LVPELPQAPL PHPAAPRLLE PAIQLGSGAL
301 RHPGALSHLR FSADGRELIS YGNGTARRWD ARNGKLLGQL GPDSTIITDW THPTANGAAV
361 IAVRRELSPD RLSVVRVETA TGRHEPLFDL PKRIGAPPRN PIQVVTAADD LLARNDDGTV
421 VLWDLRTRKQ RLTIDPPGKG HILLFTPDGK QVITAGGDGR TVRFWDVQTG KEVRSLTRAG
481 GQFPQSTLHL VSISADGRWV AALDNCSLFG YGTEVTVWDT KQPDKPQVLV LQEGGGHGSA
541 LEFGPGGILY SIDPLFNSPR PMVTKWDLSN GNKLTSWLGP YWGAHRLDTS NASPIAVNSD
601 GSVLAIGTFG GVVRLYDTKT GRELAPTDNH GAEVLSVSFD RTGREVRTVA ADGSMTAWNA
661 GTGAARARGT PLDGERLEVP ARTAMSMETP LHWILSPDGQ WALTQERHAK AHQDSAAFEW
721 TFVLRDAASG KRRVTGTVPG QITELIPVPG RDLLIYRCNA GPAHFI
//