LOCUS VTR96105.1 1099 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_6419 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-5406
PROTEIN_ID VTR96105.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_16090"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.258 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=1e-40 ;
Q/S_length_ratio=1.790"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.286 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=8e-40 ;
Q/S_length_ratio=1.841"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.179 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=3.445"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.266 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=2.592"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.256 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-37 ;
Q/S_length_ratio=1.962"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.253 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=3e-37 ;
Q/S_length_ratio=1.153"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.264 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=1.984"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DQA3|L0DQA3_SINAD ;
ALN/Q_length_ratio=0.371 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6979 PE=4 SV=1 ; EVALUE=4e-35 ;
Q/S_length_ratio=2.470"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DE85|L0DE85_SINAD ;
ALN/Q_length_ratio=0.253 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3292 PE=4 SV=1 ; EVALUE=6e-35 ;
Q/S_length_ratio=2.097"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.278 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=1.921"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.266 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-34 ;
Q/S_length_ratio=2.492"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.258 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=1.146"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.235 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=2e-34 ;
Q/S_length_ratio=2.280"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=0.287 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=0.948"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DCW6|L0DCW6_SINAD ;
ALN/Q_length_ratio=0.175 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2795 PE=4 SV=1 ; EVALUE=4e-33 ;
Q/S_length_ratio=2.855"
/note="Pfam_scan:hit_1 (39..107);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:70; HMM_Length:71;
EVALUE:4.7e-10; BITSCORE: 38.9"
/note="Pfam_scan:hit_2 (131..184);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:9.1e-10; BITSCORE: 37.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MADAHALARL ATLAHTGLPD HALLNRFASD RDECAFATLV ERHGPVVLDV ARAVLRHAQD
61 AEDVFQASFL VLARNASTIR TRTSIGCWLH GVARRIALKA RRSRMRRARH EAVPHATVSV
121 PGDELTWGEV RVLIHDELAR LPDALRAPVL LCHLEGLTLD EAAARLELSR STLRRHLDRA
181 RAVLRQRLAR RGLAAAAITF PTSISNAVPP LTVLETARSA VRFAAGFAEP TRAVELANGA
241 MSAMTAMRMK LGLLLVATFS TVGVVLAGIQ MGTGPQKADL PTAPAPVAKP ADKPLAKSET
301 DDEKLQGAWT VTGDDSPFEV GAKWVFKNGR LERPGEKNAP KPEAELNTWY KLDPKQNPRT
361 IDLTYQLGTD GPVVFTEKGI YAIEGNELKF CTVASGKERP KSFSKAMGRT LILKREPPAK
421 ATFLEQREGK PPMRTVFVSL ELTNTRSEPV WLLIRYSGDK PLPESGKFLA TENIPQAFVG
481 DRYAIAKGSE TSEVVRVSFI GGFQAFYLAP ESTVRFDRYP IECWKDVDQI EVWEVPALRV
541 NGNTVLEEWL PYRTKSDINV RVPADAPATN LDWDARTAKS RTDYPKERVE FVRAEPVRKW
601 LLPIKKPEKT PLEALQGTWY PIALEFDGLQ KTGDALNASL GEMEIKGDTI AQSFGDYERQ
661 SKIKIDATTN PKSFDLLEHP TDAEEKRGGK RTGLGIYDLT GDTLTMAVSG EGVRPTGFKT
721 TADSKFAVYT YTRKPPAKPE KAPPEFVSGE ATLYLGREGL DGAPEDTAKK QIPDKAVLAK
781 FLACFPELGR GKEAPNPGGL KANITFRFTD KEGKSITVYS TWTEWSEGQG VWPVKTNLMK
841 LTGELFERPI LIDRGTITGL WEFVKAEKGG QNENLPLIVL RAIGDKLILG GNDKLVWDNK
901 WGINYAIDPS KSPKEIDLVF LDGAERRLRH GIYTVKDNAL MICFDTNGKN RPTEFNTTKS
961 RDHSLWVFKR WSTETTPASA TGDLDKLRKK LRSGTPEEKL RALTTIHDLQ AIKLIPDVIE
1021 AIADPTALPR ESDTGWGFVG HQAATVMCEL ARVLDGTDRR GRRDYTFHDD QYKGGEKLKE
1081 LGRLEEVRKN WSRWHIDRK
//