LOCUS VTR95998.1 453 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana reverse transcriptase : Retron-type
RNA-directed DNA polymerase protein OS=Myxococcus sp.
(contaminant ex DSM 436) GN=A176_05275 PE=4 SV=1: RVT_1
protein.
ACCESSION LR593886-5299
PROTEIN_ID VTR95998.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_17160"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|U2SQ47|U2SQ47_9DELT ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=Retron-type
RNA-directed DNA polymerase protein OS=Myxococcus sp.
(contaminant ex DSM 436) GN=A176_05275 PE=4 SV=1 ;
EVALUE=1e-107 ; Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A2WI80|A2WI80_9BURK ;
ALN/Q_length_ratio=0.965 ; DESCRIPTION=Retron-type reverse
transcriptase OS=Burkholderia dolosa AUO158 GN=BDAG_04516
PE=4 SV=1 ; EVALUE=1e-106 ; Q/S_length_ratio=0.932"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DRR0|L0DRR0_SINAD ;
ALN/Q_length_ratio=0.960 ; DESCRIPTION=Reverse
transcriptase (RNA-dependent DNA polymerase)
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_7016 PE=4 SV=1 ;
EVALUE=1e-106 ; Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A024RFX7|A0A024RFX7_9BURK ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=Reverse
transcriptase OS=Burkholderia dolosa PC543 GN=BDSB_26335
PE=4 SV=1 ; EVALUE=1e-106 ; Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|G7HPH3|G7HPH3_9BURK ;
ALN/Q_length_ratio=0.773 ; DESCRIPTION=Retron-type reverse
transcriptase OS=Burkholderia cenocepacia H111 GN=I35_5811
PE=4 SV=1 ; EVALUE=1e-105 ; Q/S_length_ratio=1.044"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|T0FMF4|T0FMF4_9BURK ;
ALN/Q_length_ratio=0.773 ; DESCRIPTION=RNA-directed DNA
polymerase OS=Burkholderia cenocepacia K56-2Valvano
GN=BURCENK562V_C7460 PE=4 SV=1 ; EVALUE=1e-104 ;
Q/S_length_ratio=1.044"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|B2SZ91|B2SZ91_BURPP ;
ALN/Q_length_ratio=0.748 ; DESCRIPTION=RNA-directed DNA
polymerase (Reverse transcriptase) OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_0018 PE=4
SV=1 ; EVALUE=1e-104 ; Q/S_length_ratio=1.004"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A095EIB8|A0A095EIB8_BURCE ;
ALN/Q_length_ratio=0.773 ; DESCRIPTION=Reverse
transcriptase family protein OS=Burkholderia cepacia
GN=DM42_6593 PE=4 SV=1 ; EVALUE=1e-104 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|B4EPN4|B4EPN4_BURCJ ;
ALN/Q_length_ratio=0.773 ; DESCRIPTION=Putative reverse
transcriptase OS=Burkholderia cenocepacia (strain ATCC
BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 /
CF5610) GN=BCAS0117 PE=4 SV=1 ; EVALUE=1e-104 ;
Q/S_length_ratio=0.946"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|U1XWZ1|U1XWZ1_9BURK ;
ALN/Q_length_ratio=0.773 ; DESCRIPTION=RNA-directed DNA
polymerase OS=Burkholderia cenocepacia BC7
GN=BURCENBC7_AP1402 PE=4 SV=1 ; EVALUE=1e-104 ;
Q/S_length_ratio=1.044"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L9P8V3|L9P8V3_9BURK ;
ALN/Q_length_ratio=0.770 ; DESCRIPTION=RNA-directed DNA
polymerase from retron Mx65 OS=Janthinobacterium sp. HH01
GN=Jab_2c01100 PE=4 SV=1 ; EVALUE=1e-103 ;
Q/S_length_ratio=1.002"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|B1TAP6|B1TAP6_9BURK ;
ALN/Q_length_ratio=0.958 ; DESCRIPTION=Uncharacterized
protein OS=Burkholderia ambifaria MEX-5
GN=BamMEX5DRAFT_4862 PE=4 SV=1 ; EVALUE=1e-103 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A095ENQ6|A0A095ENQ6_BURCE ;
ALN/Q_length_ratio=0.775 ; DESCRIPTION=Reverse
transcriptase family protein OS=Burkholderia cepacia
GN=DM43_4405 PE=4 SV=1 ; EVALUE=1e-102 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A071MEW8|A0A071MEW8_9BURK ;
ALN/Q_length_ratio=0.967 ; DESCRIPTION=Reverse
transcriptase OS=Burkholderia cenocepacia GN=DT99_35715
PE=4 SV=1 ; EVALUE=1e-101 ; Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|B1FBI5|B1FBI5_9BURK ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=Uncharacterized
protein OS=Burkholderia ambifaria IOP40-10
GN=BamIOP4010DRAFT_1394 PE=4 SV=1 ; EVALUE=1e-101 ;
Q/S_length_ratio=1.044"
/note="Pfam_scan:hit_1 (156..378); Pfam:PF00078.22:RVT_1;
Pfam_type:Family;HMM_aln_Length:212; HMM_Length:214;
EVALUE:9.7e-24; BITSCORE: 83.9"
/note="GO_domain:GO:0016779"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0006259"
/note="Enzyme_Code:EC:2.7.7.49"
BEGIN
1 MTTQQRFVQN LAAGMLAGEW TAAGIRESVY RATGRRFAWG PALAKRLLNA HATAPTFPTL
61 LATLTADAGF QRGLTVLASA RNADNRFPVW HLFSAPAPPP LPRPQWAAEL PDLPNEPALA
121 EWLGVSLERL LWLADTKSRN TGHRPGSVRT YRARWVPKTH GRARLLEVPI PALMRAQRKI
181 LAELLNLVPA HPAVHGFRPG HSAITNAAQH CGRACVIRFD LTDFFPSIPV GRIFRMFLTL
241 GYSEPVARLF GCLCTTRLPA EDWNRRPNPR NDSSEYQTQT RLASRHVPQG APTSPALANL
301 TAYRLDCRLA GLASACGATY SRYADDLTFS GDDTLRRSAA RLARRVALIV VEEGFALNRG
361 KTRVQGRGER QLVTGVVVNV RPNIPREDFD QLKAILTNCV RHNPATQNRT NHPDFRAHLA
421 GRIAHVASVN PTRGRKLWAT FDRIVWDTNS AQS
//