LOCUS VTR95944.1 1259 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : Antirepressor regulating drug resistance protein
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_0255 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2: CarboxypepD_reg: CarboxypepD_reg: CarboxypepD_reg:
CarboxypepD_reg: CarboxypepD_reg: CarboxypepD_reg protein.
ACCESSION LR593886-5245
PROTEIN_ID VTR95944.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_17700"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D7S1|L0D7S1_SINAD ;
ALN/Q_length_ratio=0.380 ; DESCRIPTION=Antirepressor
regulating drug resistance protein OS=Singulisphaera
acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454
/ MOB10) GN=Sinac_0255 PE=4 SV=1 ; EVALUE=1e-152 ;
Q/S_length_ratio=1.407"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|X1CSY8|X1CSY8_9ZZZZ ;
ALN/Q_length_ratio=0.143 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H4_S07285 (Fragment) OS=marine
sediment metagenome GN=S01H4_41033 PE=4 SV=1 ;
EVALUE=3e-44 ; Q/S_length_ratio=4.356"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.527 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=2e-41 ;
Q/S_length_ratio=1.026"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.153 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=8e-39 ;
Q/S_length_ratio=3.947"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.225 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=6e-38 ;
Q/S_length_ratio=2.050"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.626 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=2e-36 ;
Q/S_length_ratio=1.321"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.353 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=6e-35 ;
Q/S_length_ratio=1.142"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=0.545 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=1.286"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.246 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=2.855"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.207 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=2.078"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.240 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=2.248"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.191 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=7e-33 ;
Q/S_length_ratio=2.201"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.207 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=2.273"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.210 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=3e-31 ;
Q/S_length_ratio=2.044"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DT29|L0DT29_SINAD ;
ALN/Q_length_ratio=0.158 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7487 PE=4 SV=1 ; EVALUE=3e-31 ;
Q/S_length_ratio=2.528"
/note="Pfam_scan:hit_1 (37..104);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:61; HMM_Length:71;
EVALUE:5.2e-08; BITSCORE: 32.3"
/note="Pfam_scan:hit_2 (125..178);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:49; HMM_Length:54;
EVALUE:1.2e-08; BITSCORE: 34.2"
/note="Pfam_scan:hit_3 (287..374);
Pfam:PF13620.1:CarboxypepD_reg;
Pfam_type:Domain;HMM_aln_Length:62; HMM_Length:82;
EVALUE:5.7e-09; BITSCORE: 35.9"
/note="Pfam_scan:hit_4 (375..471);
Pfam:PF13620.1:CarboxypepD_reg;
Pfam_type:Domain;HMM_aln_Length:61; HMM_Length:82;
EVALUE:3.2e-07; BITSCORE: 30.3"
/note="Pfam_scan:hit_5 (775..853);
Pfam:PF13620.1:CarboxypepD_reg;
Pfam_type:Domain;HMM_aln_Length:64; HMM_Length:82;
EVALUE:7.6e-09; BITSCORE: 35.5"
/note="Pfam_scan:hit_6 (859..952);
Pfam:PF13620.1:CarboxypepD_reg;
Pfam_type:Domain;HMM_aln_Length:79; HMM_Length:82;
EVALUE:8.7e-07; BITSCORE: 28.9"
/note="Pfam_scan:hit_7 (1063..1159);
Pfam:PF13620.1:CarboxypepD_reg;
Pfam_type:Domain;HMM_aln_Length:62; HMM_Length:82;
EVALUE:3.2e-07; BITSCORE: 30.2"
/note="Pfam_scan:hit_8 (1163..1252);
Pfam:PF13620.1:CarboxypepD_reg;
Pfam_type:Domain;HMM_aln_Length:54; HMM_Length:82;
EVALUE:5e-08; BITSCORE: 32.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MTTTFRTVVD VSLRHVPDAD LLRRFARAGD DAAFELLVWR YQRLVLGICR RVAGNEHDAE
61 DAFQATFLVL ARRAGIVRAE SLAGWLARVA YRCSVRARSG HRTQQSLDLS GVPAPEPVTP
121 ESDLAALLDA ELDRLPDKYR VPVVLCYLLG KTYQQAAAEL NCPLGTLSGW VTRGKELLRA
181 RLTRRGVALS AGALAANLDM LTPHALASGD GTRFVTAALA AHSSGDRAHS RAAVVANGVL
241 RMMAWKSKVP LVACGVVALV LGLAAASVGL DPPRQPAADP APVVEKGIRG VVKDSDGAPV
301 AKAFVIAVGA NGTGKRLDTT TDTEGRFTFD RFPEGQDPLF ATTLVAVKDG FAPVVGHASS
361 AFPNTVTLTL PKATTYTGTV KDRDGKAIAG AEVQFGFVTN HGNFTSWGYT PIKALRGTAV
421 EKAYAVKTDA TGAFRFTTVP DGGQLIFRAS APGFAERDTA SAAGIHKRDF VAGPNARPAN
481 LVLEPEAIVR GRVTSRMPTV SVKKVTVHLT SGQATSDRFM APDDEGRFEF RGVAAGSYNL
541 FLALPTDSTA AAVGVTVNPK IGETADVNLE VVEGVEVTGS VKVRGGEPVA GATLKAMGSF
601 NPSGHGLPQV TTDKDGRFRF WLPPGEATLA TWSTPTGFAF PNISPRKKVT VSAGRGPIVL
661 NEPFEAVRVV KGLSGKVTDA TGQPIAHVKV SALQHSSACG NFASGPVTAS WDGQFRLESS
721 PNGPLEVGRS VPLRIETSDG QRFEAAALIG KDGAAEIRVP TFPGVDGPTD VKPEELAGVV
781 VDEKGKPLAG VKVHVWDWVD NPENYTFTGA DGVFRIKDCG TQQEVQVRFR KDGYSPVMVT
841 RQKVGVKGLV IAMDRTTYFE GVVRGPDGKP VAGARVRADQ GPKMIGGGVS TPPWVAPQVW
901 TETIADAQGR YRLYVQPDEY AFHVRVPGVG VARIAKTGIA HGQGRKFDIA LEPGITFKAR
961 VVDSVSGKPV AGLRLFDWQQ KSIDGKSNAD GEITIKDMLP GEFTFRVEST SHARWWSEQV
1021 IRDWERKTID DPKTGWQRNF DGLTFDLKPG MAAVTIVAEP VVRVIGRVLD PDGNPVGGAT
1081 VALARTGSGN SLTGDTRFSV ETKTDGTFVM VLPASGAAEY NLVAHDGKYG EWRKWANGVL
1141 PPVRTKPGEV IDNVTLRLTR PGTVRGKVVD SKGRPVAGRE VRATPTDTRE NRYYDPTTTT
1201 KADGTFELKF VRPTEQQVQV APFWLRGADA PTNTSLTVGV KEGQVVEGVS LVAEEEPVK
//