LOCUS VTR95846.1 348 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana Periplasmic binding protein domain
protein OS=Gemmatimonadetes bacterium KBS708 GN=J421_5609
PE=4 SV=1: Peripla_BP_4 protein.
ACCESSION LR593886-5147
PROTEIN_ID VTR95846.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_18680"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|W0RQ70|W0RQ70_9BACT ;
ALN/Q_length_ratio=0.822 ; DESCRIPTION=Periplasmic binding
protein domain protein OS=Gemmatimonadetes bacterium
KBS708 GN=J421_5609 PE=4 SV=1 ; EVALUE=4e-68 ;
Q/S_length_ratio=1.048"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|B9XK02|B9XK02_PEDPL ;
ALN/Q_length_ratio=0.928 ; DESCRIPTION=Periplasmic binding
protein/LacI transcriptional regulator OS=Pedosphaera
parvula (strain Ellin514) GN=Cflav_PD2832 PE=4 SV=1 ;
EVALUE=6e-67 ; Q/S_length_ratio=1.055"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M5R8A5|M5R8A5_9PLAN ;
ALN/Q_length_ratio=0.848 ; DESCRIPTION=Periplasmic binding
protein/LacI transcriptional regulator OS=Rhodopirellula
maiorica SM1 GN=RMSM_07446 PE=4 SV=1 ; EVALUE=9e-63 ;
Q/S_length_ratio=1.091"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F0SQ63|F0SQ63_PLABD ;
ALN/Q_length_ratio=0.845 ; DESCRIPTION=Periplasmic binding
protein/LacI transcriptional regulator OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_3643 PE=4 SV=1 ;
EVALUE=5e-62 ; Q/S_length_ratio=1.061"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5UIZ3|M5UIZ3_9PLAN ;
ALN/Q_length_ratio=0.940 ; DESCRIPTION=Periplasmic binding
protein/LacI transcriptional regulator OS=Rhodopirellula
sallentina SM41 GN=RSSM_02567 PE=4 SV=1 ; EVALUE=3e-59 ;
Q/S_length_ratio=1.036"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|S4Y964|S4Y964_SORCE ;
ALN/Q_length_ratio=0.825 ; DESCRIPTION=Sugar ABC
transporter substrate-binding protein OS=Sorangium
cellulosum So0157-2 GN=SCE1572_50535 PE=4 SV=1 ;
EVALUE=2e-58 ; Q/S_length_ratio=1.027"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L7CGR6|L7CGR6_RHOBT ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=Uncharacterized
protein OS=Rhodopirellula baltica SWK14 GN=RBSWK_02629
PE=4 SV=1 ; EVALUE=5e-58 ; Q/S_length_ratio=0.892"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K5C909|K5C909_RHOBT ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=Periplasmic binding
protein/LacI transcriptional regulator OS=Rhodopirellula
baltica SH28 GN=RBSH_05121 PE=4 SV=1 ; EVALUE=5e-58 ;
Q/S_length_ratio=0.892"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|F2AZS0|F2AZS0_RHOBT ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=Periplasmic binding
protein/LacI transcriptional regulator OS=Rhodopirellula
baltica WH47 GN=RBWH47_05307 PE=4 SV=1 ; EVALUE=5e-58 ;
Q/S_length_ratio=0.892"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7UNV9|Q7UNV9_RHOBA ;
ALN/Q_length_ratio=0.842 ; DESCRIPTION=Bifunctional
carbohydrate binding and transport protein
OS=Rhodopirellula baltica (strain SH1) GN=rbsB PE=4 SV=1 ;
EVALUE=2e-56 ; Q/S_length_ratio=0.795"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|B1ZTE5|B1ZTE5_OPITP ;
ALN/Q_length_ratio=0.856 ; DESCRIPTION=Periplasmic binding
protein/LacI transcriptional regulator OS=Opitutus terrae
(strain DSM 11246 / PB90-1) GN=Oter_3320 PE=4 SV=1 ;
EVALUE=2e-56 ; Q/S_length_ratio=1.119"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M2AC25|M2AC25_9PLAN ;
ALN/Q_length_ratio=0.822 ; DESCRIPTION=Periplasmic binding
protein/LacI transcriptional regulator OS=Rhodopirellula
europaea 6C GN=RE6C_04787 PE=4 SV=1 ; EVALUE=9e-56 ;
Q/S_length_ratio=0.892"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A9GMT2|A9GMT2_SORC5 ;
ALN/Q_length_ratio=0.805 ; DESCRIPTION=Put.
D-ribose-binding periplasmic protein OS=Sorangium
cellulosum (strain So ce56) GN=sce3322 PE=4 SV=1 ;
EVALUE=5e-55 ; Q/S_length_ratio=1.024"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|I4C1C5|I4C1C5_DESTA ;
ALN/Q_length_ratio=0.793 ; DESCRIPTION=Monosaccharide ABC
transporter substrate-binding protein, CUT2 family
OS=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 /
DCB-1) GN=Desti_0640 PE=4 SV=1 ; EVALUE=1e-54 ;
Q/S_length_ratio=1.027"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5T6L9|M5T6L9_9PLAN ;
ALN/Q_length_ratio=0.931 ; DESCRIPTION=Periplasmic binding
protein/LacI transcriptional regulator OS=Rhodopirellula
sp. SWK7 GN=RRSWK_02786 PE=4 SV=1 ; EVALUE=6e-54 ;
Q/S_length_ratio=1.036"
/note="Pfam_scan:hit_1 (28..298);
Pfam:PF13407.1:Peripla_BP_4;
Pfam_type:Family;HMM_aln_Length:255; HMM_Length:257;
EVALUE:4.1e-43; BITSCORE: 147.5"
BEGIN
1 MPRLLYYLLA AALPVLFGCQ KPEEQFTVVV IPKGLTHEHW QSVRRGAERC ADDLRAEDGT
61 TVRIIFDGPL RERDAIEQIR IVDRRVATGA SGIVLAPQHS RTMTACVKRA ADAGVPVVII
121 DSGLDDPDHF VKYVATDNYN GGCLAARHLI GELKKQGKGK PKLILFRYAV GSQATEDRER
181 GFEETVKKIC PDAVWLSTDK YAGATRDSAM REAGPLILQF GNQVDGIFAP NESSASGTAD
241 VLRSQGLNKK VLLMGFDASK PLLQSIQEGD VIGSILQDPY RMGYLSTWYC VRYLRGRDVS
301 NGRKDMSEST GEYLVTKENL NSVFTLGLYD PETQAKRTTE ELRKGPKR
//