LOCUS VTR95825.1 305 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana family transcriptional regulator :
LysR family transcriptional regulator OS=Pseudomonas putida
CSV86 GN=CSV86_26218 PE=4 SV=1: HTH_1: LysR_substrate
protein.
ACCESSION LR593886-5126
PROTEIN_ID VTR95825.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_18890"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L1LU03|L1LU03_PSEPU ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=LysR family
transcriptional regulator OS=Pseudomonas putida CSV86
GN=CSV86_26218 PE=4 SV=1 ; EVALUE=9e-28 ;
Q/S_length_ratio=1.045"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|R4VHU3|R4VHU3_9GAMM ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=LysR family
transcriptional regulator OS=Spiribacter salinus M19-40
GN=SPISAL_00455 PE=4 SV=1 ; EVALUE=3e-24 ;
Q/S_length_ratio=0.974"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|I3CKA0|I3CKA0_9GAMM ;
ALN/Q_length_ratio=0.928 ; DESCRIPTION=Transcriptional
regulator OS=Beggiatoa alba B18LD GN=BegalDRAFT_3222 PE=4
SV=1 ; EVALUE=3e-23 ; Q/S_length_ratio=0.997"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|Q0A8N9|Q0A8N9_ALKEH ;
ALN/Q_length_ratio=0.934 ; DESCRIPTION=Transcriptional
regulator, LysR family OS=Alkalilimnicola ehrlichii
(strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=Mlg_1449
PE=4 SV=1 ; EVALUE=1e-22 ; Q/S_length_ratio=0.908"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A0A067A7C0|A0A067A7C0_9PSED ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=Bacterial
regulatory helix-turn-helix , lysR family protein
OS=Pseudomonas sp. P482 GN=BV82_4113 PE=4 SV=1 ;
EVALUE=4e-22 ; Q/S_length_ratio=1.034"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A062V6A7|A0A062V6A7_9RHOB ;
ALN/Q_length_ratio=0.915 ; DESCRIPTION=Putative oxidative
stress regulatory protein OxyR OS=Hyphomonas polymorpha
PS728 GN=HPO_14606 PE=4 SV=1 ; EVALUE=4e-22 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|W4M4Q9|W4M4Q9_9DELT ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=Uncharacterized
protein OS=Candidatus Entotheonella sp. TSY2
GN=ETSY2_26055 PE=4 SV=1 ; EVALUE=7e-22 ;
Q/S_length_ratio=1.020"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|W0TKG1|W0TKG1_9GAMM ;
ALN/Q_length_ratio=0.934 ; DESCRIPTION=LysR family
transcriptional regulator OS=gamma proteobacterium Hiromi1
GN=TBH_C0896 PE=4 SV=1 ; EVALUE=1e-21 ;
Q/S_length_ratio=0.971"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|U5T0U4|U5T0U4_9GAMM ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=Uncharacterized
protein OS=Spiribacter sp. UAH-SP71 GN=SPICUR_00425 PE=4
SV=1 ; EVALUE=1e-21 ; Q/S_length_ratio=0.962"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M7RL15|M7RL15_PSEPU ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=LysR family
transcriptional regulator OS=Pseudomonas putida LS46
GN=PPUTLS46_015919 PE=4 SV=1 ; EVALUE=2e-21 ;
Q/S_length_ratio=1.037"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|Q0BXT0|Q0BXT0_HYPNA ;
ALN/Q_length_ratio=0.915 ; DESCRIPTION=Putative oxidative
stress regulatory protein OxyR OS=Hyphomonas neptunium
(strain ATCC 15444) GN=HNE_3036 PE=4 SV=1 ; EVALUE=2e-21 ;
Q/S_length_ratio=0.987"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|U2T5R1|U2T5R1_PSEPU ;
ALN/Q_length_ratio=0.928 ; DESCRIPTION=LysR family
transcriptional regulator OS=Pseudomonas putida LF54
GN=O999_22540 PE=4 SV=1 ; EVALUE=2e-21 ;
Q/S_length_ratio=1.037"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|C9Y8L8|C9Y8L8_9BURK ;
ALN/Q_length_ratio=0.777 ; DESCRIPTION=Putative
uncharacterized protein OS=Curvibacter putative symbiont
of Hydra magnipapillata GN=Csp_A04690 PE=4 SV=1 ;
EVALUE=2e-21 ; Q/S_length_ratio=1.003"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A5W775|A5W775_PSEP1 ;
ALN/Q_length_ratio=0.928 ; DESCRIPTION=Transcriptional
regulator, LysR family OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=Pput_3861 PE=4 SV=1 ; EVALUE=2e-21 ;
Q/S_length_ratio=1.037"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|N9U990|N9U990_PSEPU ;
ALN/Q_length_ratio=0.944 ; DESCRIPTION=LysR family
transcriptional regulator OS=Pseudomonas putida TRO1
GN=C206_24495 PE=4 SV=1 ; EVALUE=2e-21 ;
Q/S_length_ratio=1.037"
/note="Pfam_scan:hit_1 (10..72); Pfam:PF00126.22:HTH_1;
Pfam_type:Domain;HMM_aln_Length:58; HMM_Length:60;
EVALUE:2.4e-08; BITSCORE: 33.5"
/note="Pfam_scan:hit_2 (92..300);
Pfam:PF03466.15:LysR_substrate;
Pfam_type:Family;HMM_aln_Length:199; HMM_Length:209;
EVALUE:5.5e-40; BITSCORE: 136.6"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MADLLPSVST DQVAALVELA RAGSLRAAAA GLHITEQGLR NRLVALEGLL EVSLYHKQRG
61 PRRRSPLTPQ GEQFLPRATA FLESARRLGG NEPAGPQEVH VAATQYLTLY AMLDAVRRFH
121 RAFPAIRVRL SSRTERDIED ALLRDPDLAF GVAAPYEGGS GLDYRHLFSL DWGLITPPRH
181 PLLKKRGLTL ADLVGVPLIV FERGSTGRQH VLNAFYRLGL SPRVDMEATT TGIVVKMVEA
241 GLGVSLVPLM PNGSVTRGVN VGVRKLPDQI EPIHSGILIR RGETPPPAAE AFIQFLKPTD
301 TTPPG
//