LOCUS VTR95788.1 388 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana trna pseudouridine synthase d : tRNA
pseudouridine synthase D OS=Planctomyces limnophilus (
strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=truD
PE=3 SV=1: TruD protein.
ACCESSION LR593886-5089
PROTEIN_ID VTR95788.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_19260"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5SSY2|D5SSY2_PLAL2 ;
ALN/Q_length_ratio=0.990 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Planctomyces limnophilus (strain ATCC 43296
/ DSM 3776 / IFAM 1008 / 290) GN=truD PE=3 SV=1 ;
EVALUE=1e-106 ; Q/S_length_ratio=0.898"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DAS5|L0DAS5_SINAD ;
ALN/Q_length_ratio=0.995 ; DESCRIPTION=Uncharacterized
protein OS=Singulisphaera acidiphila (strain ATCC BAA-1392
/ DSM 18658 / VKM B-2454 / MOB10) GN=Sinac_1549 PE=4 SV=1
; EVALUE=1e-104 ; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8R1E2|E8R1E2_ISOPI ;
ALN/Q_length_ratio=1.088 ; DESCRIPTION=tRNA pseudouridine
synthase D TruD OS=Isosphaera pallida (strain ATCC 43644 /
DSM 9630 / IS1B) GN=Isop_1776 PE=4 SV=1 ; EVALUE=1e-102 ;
Q/S_length_ratio=0.800"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D2R3I6|D2R3I6_PIRSD ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=tRNA pseudouridine
synthase D TruD OS=Pirellula staleyi (strain ATCC 27377 /
DSM 6068 / ICPB 4128) GN=Psta_0530 PE=4 SV=1 ;
EVALUE=3e-83 ; Q/S_length_ratio=0.928"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|H5SFF4|H5SFF4_9BACT ;
ALN/Q_length_ratio=0.990 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=uncultured Acidobacteria bacterium GN=truD
PE=3 SV=1 ; EVALUE=3e-63 ; Q/S_length_ratio=0.946"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|B5YJH5|B5YJH5_THEYD ;
ALN/Q_length_ratio=0.987 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=truD PE=4 SV=1 ;
EVALUE=1e-61 ; Q/S_length_ratio=0.995"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F8A924|F8A924_THEID ;
ALN/Q_length_ratio=0.972 ; DESCRIPTION=tRNA pseudouridine
synthase D TruD OS=Thermodesulfatator indicus (strain DSM
15286 / JCM 11887 / CIR29812) GN=Thein_1285 PE=4 SV=1 ;
EVALUE=4e-60 ; Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A7HA39|A7HA39_ANADF ;
ALN/Q_length_ratio=0.990 ; DESCRIPTION=tRNA pseudouridine
synthase D TruD OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=Anae109_1378 PE=4 SV=1 ; EVALUE=4e-59 ;
Q/S_length_ratio=0.853"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A4G0I3|A4G0I3_METM5 ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=Pseudouridylate
synthase OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=MmarC5_1670 PE=4 SV=1 ; EVALUE=3e-58 ;
Q/S_length_ratio=0.997"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A6VI02|A6VI02_METM7 ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=tRNA pseudouridine
synthase D TruD OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=MmarC7_1011 PE=4 SV=1 ; EVALUE=3e-57 ;
Q/S_length_ratio=0.997"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|D9S1H9|D9S1H9_THEOJ ;
ALN/Q_length_ratio=0.987 ; DESCRIPTION=tRNA pseudouridine
synthase D TruD OS=Thermosediminibacter oceani (strain
ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) GN=Toce_0479 PE=4
SV=1 ; EVALUE=5e-57 ; Q/S_length_ratio=1.003"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|Q67QU4|Q67QU4_SYMTH ;
ALN/Q_length_ratio=0.979 ; DESCRIPTION=Putative
uncharacterized protein OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=STH964 PE=4 SV=1 ; EVALUE=6e-57
; Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A090ASX7|A0A090ASX7_METMI ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=Putative tRNA
pseudouridine synthase D OS=Methanococcus maripaludis OS7
GN=truD PE=4 SV=1 ; EVALUE=7e-57 ; Q/S_length_ratio=0.997"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A090AQT5|A0A090AQT5_METMI ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=Putative tRNA
pseudouridine synthase D OS=Methanococcus maripaludis KA1
GN=truD PE=4 SV=1 ; EVALUE=7e-57 ; Q/S_length_ratio=0.997"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|G0H0U2|G0H0U2_METMI ;
ALN/Q_length_ratio=0.992 ; DESCRIPTION=tRNA pseudouridine
synthase D OS=Methanococcus maripaludis X1 GN=truD PE=4
SV=1 ; EVALUE=7e-57 ; Q/S_length_ratio=0.997"
/note="Pfam_scan:hit_1 (1..385); Pfam:PF01142.13:TruD;
Pfam_type:Family;HMM_aln_Length:356; HMM_Length:378;
EVALUE:3.7e-73; BITSCORE: 246.3"
/note="GO_domain:GO:0003723"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0016853"
/note="Enzyme_Code:EC:5.4.99.12"
BEGIN
1 MKLKQQPEDF RVEELTDTVP ADAGDFALYR LDKTGWTTPD ALAAIRRRWQ LDFRRLSYGG
61 LKDRHAVTSQ HVTVFRGAKR NLSHERVTLA YLGQCAEPFT AANIRANRFT LALRSLSDSA
121 VAHAEDALRE VAVAGVPNYF DDQRFGSVGE AEEFVAKEMV FGRFERALWL ALAAPYEFDR
181 ADAKREKATL IELWGKWPEC QAKLPKGHAR SLVSYLAAHP TDFKGAVARL RPELQGLYLS
241 AYQSYLWNKM LAAWLTATLG AENLTTVELK LGRVPVPVRV PEGHRAAWES LTLPLPSARV
301 KPAPDAAWQP IVEEALKSEG LTLAELKVKG MQKPFFSKGD RSACVRPENL SHTAEADELN
361 RGRKKLVLRF DLPRGSYATM LVKRVTGN
//