LOCUS VTR95639.1 197 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma-24 ecf subfamily : RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi (
strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_3393
PE=4 SV=1: Sigma70_r4_2 protein.
ACCESSION LR593886-4940
PROTEIN_ID VTR95639.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_20750"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D2QXY0|D2QXY0_PIRSD ;
ALN/Q_length_ratio=0.914 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_3393
PE=4 SV=1 ; EVALUE=6e-55 ; Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|A3ZWG0|A3ZWG0_9PLAN ;
ALN/Q_length_ratio=0.949 ; DESCRIPTION=Probable ECF sigma
factor AdsA OS=Blastopirellula marina DSM 3645
GN=DSM3645_26234 PE=4 SV=1 ; EVALUE=1e-46 ;
Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A6C3L5|A6C3L5_9PLAN ;
ALN/Q_length_ratio=0.904 ; DESCRIPTION=Probable ECF sigma
factor AdsA OS=Planctomyces maris DSM 8797
GN=PM8797T_26620 PE=4 SV=1 ; EVALUE=3e-45 ;
Q/S_length_ratio=0.952"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5RLF8|M5RLF8_9PLAN ;
ALN/Q_length_ratio=0.868 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula maiorica
SM1 GN=RMSM_02938 PE=4 SV=1 ; EVALUE=7e-32 ;
Q/S_length_ratio=0.956"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|M5TA15|M5TA15_9PLAN ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula sp. SWK7
GN=RRSWK_04968 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=0.956"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5TT26|M5TT26_9PLAN ;
ALN/Q_length_ratio=0.954 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula
sallentina SM41 GN=RSSM_06247 PE=4 SV=1 ; EVALUE=2e-27 ;
Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L7CIW8|L7CIW8_RHOBT ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula baltica
SWK14 GN=RBSWK_01771 PE=4 SV=1 ; EVALUE=1e-25 ;
Q/S_length_ratio=0.908"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K5E2F7|K5E2F7_RHOBT ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula baltica
SH28 GN=RBSH_04671 PE=4 SV=1 ; EVALUE=1e-25 ;
Q/S_length_ratio=0.908"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|F2ALG5|F2ALG5_RHOBT ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula baltica
WH47 GN=RBWH47_04501 PE=4 SV=1 ; EVALUE=1e-25 ;
Q/S_length_ratio=0.908"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5S515|M5S515_9PLAN ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula europaea
SH398 GN=RESH_02616 PE=4 SV=1 ; EVALUE=2e-25 ;
Q/S_length_ratio=0.895"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|Q7UMX2|Q7UMX2_RHOBA ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=Probable ECF sigma
factor AdsA OS=Rhodopirellula baltica (strain SH1) GN=sig
PE=4 SV=1 ; EVALUE=2e-25 ; Q/S_length_ratio=0.864"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M2A9L5|M2A9L5_9PLAN ;
ALN/Q_length_ratio=0.939 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Rhodopirellula europaea
6C GN=RE6C_00362 PE=4 SV=1 ; EVALUE=5e-25 ;
Q/S_length_ratio=0.876"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DGB6|L0DGB6_SINAD ;
ALN/Q_length_ratio=0.929 ; DESCRIPTION=RNA polymerase
sigma-70 factor, Planctomycetaceae-specific subfamily 1
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_3626 PE=4 SV=1 ;
EVALUE=5e-21 ; Q/S_length_ratio=0.966"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5RQ06|M5RQ06_9PLAN ;
ALN/Q_length_ratio=0.919 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula maiorica SM1
GN=RMSM_01660 PE=4 SV=1 ; EVALUE=1e-19 ;
Q/S_length_ratio=0.943"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5TC03|M5TC03_9PLAN ;
ALN/Q_length_ratio=0.934 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_06332
PE=4 SV=1 ; EVALUE=4e-18 ; Q/S_length_ratio=0.879"
/note="Pfam_scan:hit_1 (134..187);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:46; HMM_Length:54;
EVALUE:1.3e-10; BITSCORE: 40.5"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSDVPRSDAP LDPAAFAAFL EQRRPGLVAF IEGRLGATLR GKLDPQDIAQ EVAIKALREL
61 PQTDLGDRDP FGWLCHLAEQ CVIDAHRHFT ASKRAAEREQ PGNVPAGEGS SDLIALLAAS
121 ITTPTQAVVR DEREVRLREA IATLPEEHRE ALRLRYVEGL ATKDVAARLN KSDVATRVLL
181 TRLVHRLQEL LGPGEGA
//