LOCUS VTR95563.1 987 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana dna polymerase i : DNA polymerase I
OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB
4128) GN=Psta_3785 PE=3 SV=1: 5_3_exonuc_N: 5_3_exonuc:
DNA_pol_A_exo1: DNA_pol_A protein.
ACCESSION LR593886-4864
PROTEIN_ID VTR95563.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_21510"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A3XHP6|A3XHP6_LEEBM ;
ALN/Q_length_ratio=0.952 ; DESCRIPTION=Putative DNA
polymerase I OS=Leeuwenhoekiella blandensis (strain CECT
7118 / CCUG 51940 / MED217) GN=MED217_16690 PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|D5SSA9|D5SSA9_PLAL2 ;
ALN/Q_length_ratio=0.947 ; DESCRIPTION=DNA polymerase I
OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776
/ IFAM 1008 / 290) GN=Plim_3011 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.031"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A0A078QQK9|A0A078QQK9_BACVU ;
ALN/Q_length_ratio=0.979 ; DESCRIPTION=DNA polymerase I
OS=Bacteroides vulgatus str. 3775 SR(B) 19 GN=polA PE=3
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|C6W4A8|C6W4A8_DYAFD ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=DNA polymerase I
OS=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053
/ NS114) GN=Dfer_1096 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|R9ICM1|R9ICM1_9BACE ;
ALN/Q_length_ratio=0.964 ; DESCRIPTION=DNA polymerase I
OS=Bacteroides massiliensis dnLKV3 GN=C802_00501 PE=3 SV=1
; EVALUE=0.0 ; Q/S_length_ratio=1.032"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A076IY92|A0A076IY92_9BACE ;
ALN/Q_length_ratio=0.979 ; DESCRIPTION=DNA polymerase I
OS=Bacteroides dorei GN=GV66_05550 PE=3 SV=1 ; EVALUE=0.0
; Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M7NRN2|M7NRN2_9BACT ;
ALN/Q_length_ratio=0.970 ; DESCRIPTION=DNA polymerase I
OS=Cesiribacter andamanensis AMV16 GN=polA PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.029"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A6KZN3|A6KZN3_BACV8 ;
ALN/Q_length_ratio=0.979 ; DESCRIPTION=DNA polymerase I
OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
NCTC 11154) GN=BVU_1207 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|D7VXF5|D7VXF5_9FLAO ;
ALN/Q_length_ratio=0.953 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Chryseobacterium gleum ATCC 35910 GN=polA
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.046"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|D4VA16|D4VA16_BACVU ;
ALN/Q_length_ratio=0.979 ; DESCRIPTION=DNA-directed DNA
polymerase OS=Bacteroides vulgatus PC510 GN=polA PE=3 SV=1
; EVALUE=0.0 ; Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A0A095U3K0|A0A095U3K0_9FLAO ;
ALN/Q_length_ratio=0.957 ; DESCRIPTION=DNA polymerase I
OS=Flavobacterium aquatile LMG 4008 GN=LG45_05850 PE=4
SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.036"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A078REV8|A0A078REV8_BACVU ;
ALN/Q_length_ratio=0.979 ; DESCRIPTION=DNA polymerase I
OS=Bacteroides vulgatus str. 3775 SL(B) 10 (iv) GN=polA
PE=3 SV=1 ; EVALUE=0.0 ; Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|V6RZW3|V6RZW3_9FLAO ;
ALN/Q_length_ratio=0.955 ; DESCRIPTION=DNA polymerase I
OS=Flavobacterium cauense R2A-7 GN=FCR2A7T_14310 PE=3 SV=1
; EVALUE=0.0 ; Q/S_length_ratio=1.038"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A084TMH7|A0A084TMH7_9FLAO ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=DNA polymerase I
OS=Mangrovimonas yunxiaonensis GN=IA57_03325 PE=3 SV=1 ;
EVALUE=0.0 ; Q/S_length_ratio=1.030"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D2R075|D2R075_PIRSD ;
ALN/Q_length_ratio=0.963 ; DESCRIPTION=DNA polymerase I
OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB
4128) GN=Psta_3785 PE=3 SV=1 ; EVALUE=0.0 ;
Q/S_length_ratio=1.022"
/note="Pfam_scan:hit_1 (8..170);
Pfam:PF02739.11:5_3_exonuc_N;
Pfam_type:Domain;HMM_aln_Length:162; HMM_Length:169;
EVALUE:4.5e-42; BITSCORE: 143.2"
/note="Pfam_scan:hit_2 (172..275);
Pfam:PF01367.15:5_3_exonuc;
Pfam_type:Domain;HMM_aln_Length:99; HMM_Length:101;
EVALUE:9.9e-25; BITSCORE: 86.7"
/note="Pfam_scan:hit_3 (386..571);
Pfam:PF01612.15:DNA_pol_A_exo1;
Pfam_type:Domain;HMM_aln_Length:174; HMM_Length:176;
EVALUE:5e-28; BITSCORE: 97.7"
/note="Pfam_scan:hit_4 (600..984);
Pfam:PF00476.15:DNA_pol_A;
Pfam_type:Family;HMM_aln_Length:380; HMM_Length:383;
EVALUE:1.7e-119; BITSCORE: 398.9"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0016779"
/note="GO_domain:GO:0004518"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0006259"
/note="GO_domain:GO:0005622"
/note="Enzyme_Code:EC:3.1"
/note="Enzyme_Code:EC:2.7.7.7"
BEGIN
1 MSDPVSAGNL YLLDAHGLIF QMFFGVGPMN APDGRPTNAV FGVTRSLMNL YDRGADYLIA
61 ALDHAEPTFR ETIDSNYKAH RDPPPDDLLL QEPLIQQVME AMRVPFLIAK GYEADDVMAT
121 VASAAAARGL NVFLCTSDKD CRQLVTDKVK MLNLRKDYEV LDAAGIIADW GVRPDQVVDF
181 QSLVGDSVDN IPGVMGVGPK TAAKWLQQYG TLDELIAHAD EAPGGPKTRQ ALKDAIANGN
241 LAKSKQLVTL DRNVPIPLDW EGWRRRDWDG QKLLELFHEF GFRGFAERVR KTLTNSGAKK
301 NADALATAGI APAPAPVEDT SGRGVPGASA QPAKPAKQPK GKAKKAATPG LFDLLMEETG
361 ESAPPVEATP LVEAAIPTDS WNYAGYETVD SEASFGAFLA ELKKQKAFVF DLETTGLDPI
421 HDPIVGFAFC WEREWAYYLP VRAPQEDTAL DPNATLAALK PIFEDPKIEK RNHNIKFDQI
481 VLAANGVELA GVAGDSMLAH YLLDPGARVH GLDDLTLDVL KHKNIAIAEL IGKGKKQTTM
541 NTVRVARVRD YACEDADAAF QLATIFEPQL AEKGFRELYD TLEVPLIGVL ADMERTGIRV
601 DVPFLKQLGE QMGAELAGLE TDIHALAGRE FNIASLKELQ KILFEELKLP VQKRTGIKNE
661 PSTDQESLER LAALGHELPK KLIAHRKVTK LKGTYVDVLP VMADKTGRVH TSFNQASAET
721 GRLSSSDPNL QNIPMRTEQG AQLRKAFIPR DGWTLVTADY SQIELRLLAQ FCGDETLKSA
781 FTEDRDVHTA VAAQIFKVPE ADVTKAQRGV AKTVNFGVIY GMSATGLAVR LAIPRKEAEE
841 FIDAYFARYP KVLEYQQKLL AHAHKTGEVR TLLGRKRILN AAAINPNSRY QGRGQAEREA
901 INYEIQGSAA DLIKRAMLAV QRRLAAQKMQ AKMLLTVHDE LVFEAPPSEV EPLAKLVREE
961 MTTAMKLDVP LRVDVAAGSN WLDVEDV
//