LOCUS VTR95514.1 1067 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_4965 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-4815
PROTEIN_ID VTR95514.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_22000"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.276 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-37 ;
Q/S_length_ratio=1.195"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DPR4|L0DPR4_SINAD ;
ALN/Q_length_ratio=0.277 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6601 PE=4 SV=1 ; EVALUE=1e-35 ;
Q/S_length_ratio=1.761"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.213 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=1e-33 ;
Q/S_length_ratio=2.517"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0D6V6|L0D6V6_SINAD ;
ALN/Q_length_ratio=0.265 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0102 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=1.905"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DKL4|L0DKL4_SINAD ;
ALN/Q_length_ratio=0.269 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5058 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=1.113"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.263 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=2.130"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DIK4|L0DIK4_SINAD ;
ALN/Q_length_ratio=0.192 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4459 PE=4 SV=1 ; EVALUE=2e-31 ;
Q/S_length_ratio=1.090"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.263 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=3e-31 ;
Q/S_length_ratio=0.870"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.262 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=4e-31 ;
Q/S_length_ratio=0.968"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.254 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=4e-31 ;
Q/S_length_ratio=1.738"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.295 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=2.420"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.237 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=1e-30 ;
Q/S_length_ratio=1.120"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.276 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=2e-30 ;
Q/S_length_ratio=1.520"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.262 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=4e-30 ;
Q/S_length_ratio=2.214"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DD82|L0DD82_SINAD ;
ALN/Q_length_ratio=0.250 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2507 PE=4 SV=1 ; EVALUE=1e-29 ;
Q/S_length_ratio=1.186"
/note="Pfam_scan:hit_1 (40..109);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:61; HMM_Length:71;
EVALUE:1.8e-10; BITSCORE: 40.2"
/note="Pfam_scan:hit_2 (134..187);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:4.3e-10; BITSCORE: 38.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MPRSAVALVR FAAPPTSRTT DGQLLRAFVA ARTDDAFAEL VRRHGPMVLA VCRRVLANPH
61 DAEDAFQAVF LVLARKAGAV RGSNVAGWLY SVAVRTARGV RVMRDRRKHV VASQSARISA
121 PTIPDDALVL TEQAAIIDEE LAKLPELLRE AIVLCELHGL SRKQAALELE IAEGTLSSRL
181 AAAKRKLAER LSARGVTATL ALSVLLPPAA LSAGLLRTTT AAVRGAAGSV ANAAASTVLK
241 GMLFDQLRAV ALTTVLLATI VCGGYAMTAS HNSPPESAPT APAPHPADDP ATSLVKQLGS
301 EDFNERETAD KELRKLGLKA EAALKSGLKA ESPEVRARAA AILTAVRKSA LEELAKTFDP
361 KADGEPTHPV WKRYRAIVGN TPASRELFAL IVKHADWLHR LGTAEAGPES AAQQYREAMV
421 QMGRHFLGNL RVFFEIPVWP CDYGQETAYL MLLGSYPGTE KARSKCVGEE AELFLHGEGR
481 IHFARGLELG LQGKTLEQSP KFRPDTVDAA PGTNRVFGKL LASWLTHRTE PAVIYCAFEL
541 AVKWRTADVL SAARTIAADK GHGPDARCAA LHAIAQFGTT ADLSLFAPLY DDPTTLVVPP
601 SPSIGLGPRS RRMQVRDHAV GLALLLCDRD PFEFGFPYAQ NRFARDNGRP VVAVYVGEPF
661 AFPNEEAQTT AHTKARAFLD KQKDAPKPDP AHMKLIEQLG SEDFAEREAT QKQLKELGSK
721 ARAALEAGMK SGNAETVKRC RELLDQLTRA EFDATHWPRF AKVIGDDKPS RALFERIRSL
781 PRNVELLDAV AANPNAAGKL YHDRWAELNK TARVPIGVGS FQLVAAPLAD VVGWMYLGTF
841 PGTEGAFSTS YSLDFLPGGK HSNDAIAAVL KDKTVAPAVR QLVGKWTAAR VDYTGRAYGL
901 QLALDFGLEE VLAAARETVR AKVKDDPYPG NTAQNVRLAM LVVGKLGSKD DLPLLEAHTA
961 NDTQCGVFLH DPPEKPGQPV FRIYRLPVEG QDTTIQVRDV STAMRLHLLG QNPDDFGFYW
1021 RWPHGSDAGK RMEPDDRFSS YSIGFLRKTD RAAAHKKAQE WFDKQKK
//