LOCUS VTR95504.1 192 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-e factor : RNA
polymerase sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
sp. SWK7 GN=RRSWK_02250 PE=4 SV=1: Sigma70_r4_2 protein.
ACCESSION LR593886-4805
PROTEIN_ID VTR95504.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_22100"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|M5TIA6|M5TIA6_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula sp.
SWK7 GN=RRSWK_02250 PE=4 SV=1 ; EVALUE=1e-46 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|M5UBX1|M5UBX1_9PLAN ;
ALN/Q_length_ratio=0.880 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
sallentina SM41 GN=RSSM_03163 PE=4 SV=1 ; EVALUE=4e-44 ;
Q/S_length_ratio=0.889"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|M2ACE2|M2ACE2_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula europaea 6C GN=RE6C_04957
PE=4 SV=1 ; EVALUE=6e-44 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|M5S9R0|M5S9R0_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula europaea SH398
GN=RESH_01186 PE=4 SV=1 ; EVALUE=2e-43 ;
Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F2AKJ6|F2AKJ6_RHOBT ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula baltica WH47
GN=RBWH47_00968 PE=4 SV=1 ; EVALUE=4e-43 ;
Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L7CN71|L7CN71_RHOBT ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula baltica SWK14
GN=RBSWK_01077 PE=4 SV=1 ; EVALUE=8e-43 ;
Q/S_length_ratio=0.831"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|Q7UPG3|Q7UPG3_RHOBA ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=Probable RNA
polymerase sigma-E factor (ECF subfamily of sigma-70)
OS=Rhodopirellula baltica (strain SH1) GN=RB6961 PE=4 SV=1
; EVALUE=9e-43 ; Q/S_length_ratio=0.831"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|K5CF58|K5CF58_RHOBT ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula
baltica SH28 GN=RBSH_02164 PE=4 SV=1 ; EVALUE=1e-42 ;
Q/S_length_ratio=0.831"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A0A090KMG5|A0A090KMG5_9BACT ;
ALN/Q_length_ratio=0.943 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=4e-40 ;
Q/S_length_ratio=0.941"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|M5RNZ9|M5RNZ9_9PLAN ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula maiorica SM1
GN=RMSM_02030 PE=4 SV=1 ; EVALUE=2e-39 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5UMY5|M5UMY5_9PLAN ;
ALN/Q_length_ratio=0.917 ; DESCRIPTION=RNA-polymerase
sigma-E factor OS=Rhodopirellula sallentina SM41
GN=RSSM_01214 PE=4 SV=1 ; EVALUE=1e-32 ;
Q/S_length_ratio=0.980"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|M5TFG2|M5TFG2_9PLAN ;
ALN/Q_length_ratio=0.891 ; DESCRIPTION=RNA polymerase
sigma-E type, Rhodopirellula baltica OS=Rhodopirellula sp.
SWK7 GN=RRSWK_03057 PE=4 SV=1 ; EVALUE=2e-32 ;
Q/S_length_ratio=0.980"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|M5RQ06|M5RQ06_9PLAN ;
ALN/Q_length_ratio=0.990 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula maiorica SM1
GN=RMSM_01660 PE=4 SV=1 ; EVALUE=4e-32 ;
Q/S_length_ratio=0.919"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5UGD9|M5UGD9_9PLAN ;
ALN/Q_length_ratio=0.911 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula sallentina SM41
GN=RSSM_01676 PE=4 SV=1 ; EVALUE=5e-30 ;
Q/S_length_ratio=0.901"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|M5TC03|M5TC03_9PLAN ;
ALN/Q_length_ratio=0.917 ; DESCRIPTION=RNA polymerase
sigma-E factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_06332
PE=4 SV=1 ; EVALUE=1e-29 ; Q/S_length_ratio=0.857"
/note="Pfam_scan:hit_1 (127..180);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:51; HMM_Length:54;
EVALUE:5.6e-09; BITSCORE: 35.3"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MDNAENANER TLGRYRDYLL VLARLHLGAR LRTKLDASDI VQQTILQAHT HQAQFRGATE
61 AEWLGWLRVI LANTLAGVVR EFETAARDLS RERSLEAALE QSSARLECLL AADQSSPSGG
121 AVRGEELLSL ARALSRLPDD QRLVVELHYL KVLPVADVAA HVGRTRPAVV GLLFRGLKKL
181 RELLREPEEG AA
//