LOCUS VTR95474.1 576 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_0869 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-4775
PROTEIN_ID VTR95474.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_22400"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.571 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=3e-38 ;
Q/S_length_ratio=1.195"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.465 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=5e-38 ;
Q/S_length_ratio=0.938"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|L0DR85|L0DR85_SINAD ;
ALN/Q_length_ratio=0.481 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7453 PE=4 SV=1 ; EVALUE=3e-36 ;
Q/S_length_ratio=0.965"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|L0DGG0|L0DGG0_SINAD ;
ALN/Q_length_ratio=0.398 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4264 PE=4 SV=1 ; EVALUE=2e-35 ;
Q/S_length_ratio=1.358"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.413 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=4e-34 ;
Q/S_length_ratio=0.645"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L0DHB8|L0DHB8_SINAD ;
ALN/Q_length_ratio=0.514 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3834 PE=4 SV=1 ; EVALUE=6e-34 ;
Q/S_length_ratio=1.040"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|L0DQE6|L0DQE6_SINAD ;
ALN/Q_length_ratio=0.304 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_7079 PE=4 SV=1 ; EVALUE=2e-33 ;
Q/S_length_ratio=0.604"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0D7L2|L0D7L2_SINAD ;
ALN/Q_length_ratio=0.359 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0185 PE=4 SV=1 ; EVALUE=3e-33 ;
Q/S_length_ratio=1.150"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DGT0|L0DGT0_SINAD ;
ALN/Q_length_ratio=0.469 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3827 PE=4 SV=1 ; EVALUE=3e-32 ;
Q/S_length_ratio=0.935"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DIU5|L0DIU5_SINAD ;
ALN/Q_length_ratio=0.474 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4592 PE=4 SV=1 ; EVALUE=2e-31 ;
Q/S_length_ratio=1.007"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DHG5|L0DHG5_SINAD ;
ALN/Q_length_ratio=0.535 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3888 PE=4 SV=1 ; EVALUE=2e-31 ;
Q/S_length_ratio=0.821"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DLJ0|L0DLJ0_SINAD ;
ALN/Q_length_ratio=0.502 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5383 PE=4 SV=1 ; EVALUE=7e-31 ;
Q/S_length_ratio=1.806"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.453 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=2e-30 ;
Q/S_length_ratio=0.523"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|L0DJM8|L0DJM8_SINAD ;
ALN/Q_length_ratio=0.497 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4894 PE=4 SV=1 ; EVALUE=3e-30 ;
Q/S_length_ratio=1.306"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.323 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=4e-30 ;
Q/S_length_ratio=0.469"
/note="Pfam_scan:hit_1 (41..107);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:5.3e-07; BITSCORE: 29.1"
/note="Pfam_scan:hit_2 (128..181);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:6.9e-10; BITSCORE: 38.2"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MRGLLERLLA RHRRTADEGV TDAELLRRFA RDRDESAFEL LVWRHGAMVL GMCRRAIGDE
61 QLAEDAFQAV FLVLSRKAGG VRGNLGGWLF KVARRVSARA ASRRRPVHPV TEAAAELQPD
121 LTERQELTDL LDAEVARLPE RLRRPVVLCY LGEHSTEDAA RELGCPRGTI LSRLATARTR
181 LAERLARRGV VLPATISVAG VSLTGRVVSS ATTAARRFRF GSLEADPVTH LAEGVIQTMN
241 RGTLLTAFGG TLLAVTLVSG VGWVAAQQGT RPESVGDGAA PVAKVNAEPG NAPSQPAEPG
301 ALDEDKKVRD QIKTLALQAL QLKEQLQVRE KEFERLAEEA EKRAVRRAAL QKEFDEVEAE
361 YQKLSREIVK MEAELAVLKR RAARPVSEPE AASIQQEMSR DPSLKDLSAE LQSAQKQLRT
421 VVEQGIGETT PLIQKQKEKV AELEKRCDAL RASVQGEIIA RLKVELSQTL RDRIVKQSME
481 VEIQKEVLEV IRSRRDVSAR MLSDAISGTV GQRGRDADFD AKRDSLAKIQ AEITRLQLKR
541 EGIVTPRMDE TEAKLDLLIR EIAELRKEVR ELKSKK
//