LOCUS VTR95374.1 114 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana ribosomal subunit interface protein
: 30S ribosomal protein S30 OS=uncultured planctomycete
GN=HGMM_F07G10C20 PE=4 SV=1: Ribosomal_S30AE protein.
ACCESSION LR593886-4675
PROTEIN_ID VTR95374.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_23400"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|H5SC06|H5SC06_9BACT ;
ALN/Q_length_ratio=0.895 ; DESCRIPTION=30S ribosomal
protein S30 OS=uncultured planctomycete GN=HGMM_F07G10C20
PE=4 SV=1 ; EVALUE=2e-28 ; Q/S_length_ratio=1.075"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|F0SQA5|F0SQA5_PLABD ;
ALN/Q_length_ratio=0.868 ; DESCRIPTION=Ribosomal subunit
interface protein OS=Planctomyces brasiliensis (strain
ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM
1448) GN=Plabr_4713 PE=4 SV=1 ; EVALUE=1e-24 ;
Q/S_length_ratio=0.950"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|A6C9Q2|A6C9Q2_9PLAN ;
ALN/Q_length_ratio=0.868 ; DESCRIPTION=Probable sigma-54
modulation protein OS=Planctomyces maris DSM 8797
GN=PM8797T_06917 PE=4 SV=1 ; EVALUE=6e-23 ;
Q/S_length_ratio=0.919"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D5SPI3|D5SPI3_PLAL2 ;
ALN/Q_length_ratio=0.877 ; DESCRIPTION=Ribosomal subunit
interface protein OS=Planctomyces limnophilus (strain ATCC
43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0362 PE=4 SV=1
; EVALUE=6e-21 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|L0DFA4|L0DFA4_SINAD ;
ALN/Q_length_ratio=0.868 ; DESCRIPTION=Ribosomal subunit
interface protein OS=Singulisphaera acidiphila (strain
ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3264 PE=4 SV=1 ; EVALUE=1e-15 ;
Q/S_length_ratio=0.958"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|M5RWB7|M5RWB7_9PLAN ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=Ribosomal subunit
interface protein OS=Rhodopirellula maiorica SM1
GN=RMSM_03362 PE=4 SV=1 ; EVALUE=3e-14 ;
Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|M5TA27|M5TA27_9PLAN ;
ALN/Q_length_ratio=0.816 ;
DESCRIPTION=Ribosome-associated, sigma 54 modulation
protein (Modular protein) OS=Rhodopirellula sp. SWK7
GN=RRSWK_01557 PE=4 SV=1 ; EVALUE=5e-11 ;
Q/S_length_ratio=0.905"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5UPM3|M5UPM3_9PLAN ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=Sigma-54 modulation
protein OS=Rhodopirellula sallentina SM41 GN=RSSM_00598
PE=4 SV=1 ; EVALUE=6e-11 ; Q/S_length_ratio=0.870"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A3ZLA7|A3ZLA7_9PLAN ;
ALN/Q_length_ratio=0.763 ; DESCRIPTION=Probable sigma-54
modulation protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_09082 PE=4 SV=1 ; EVALUE=2e-10 ;
Q/S_length_ratio=1.096"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|K5DH41|K5DH41_RHOBT ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=Ribosomal subunit
interface protein OS=Rhodopirellula baltica SH28
GN=RBSH_02485 PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|X0WA38|X0WA38_9ZZZZ ;
ALN/Q_length_ratio=0.728 ; DESCRIPTION=Marine sediment
metagenome DNA, contig: S01H1_S17573 (Fragment) OS=marine
sediment metagenome GN=S01H1_50214 PE=4 SV=1 ;
EVALUE=1e-09 ; Q/S_length_ratio=1.140"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5RWU4|M5RWU4_9PLAN ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=Ribosomal subunit
interface protein OS=Rhodopirellula europaea SH398
GN=RESH_05644 PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7UMU4|Q7UMU4_RHOBA ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=Probable sigma-54
modulation protein OS=Rhodopirellula baltica (strain SH1)
GN=RB8580 PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|F2AZ57|F2AZ57_RHOBT ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=Ribosomal subunit
interface protein OS=Rhodopirellula baltica WH47
GN=RBWH47_02314 PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.009"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L7CDY5|L7CDY5_RHOBT ;
ALN/Q_length_ratio=0.860 ; DESCRIPTION=Ribosomal subunit
interface protein OS=Rhodopirellula baltica SWK14
GN=RBSWK_03927 PE=4 SV=1 ; EVALUE=1e-09 ;
Q/S_length_ratio=1.009"
/note="Pfam_scan:hit_1 (2..99);
Pfam:PF02482.14:Ribosomal_S30AE;
Pfam_type:Family;HMM_aln_Length:96; HMM_Length:97;
EVALUE:9.5e-16; BITSCORE: 58.0"
/note="GO_domain:GO:0008150"
BEGIN
1 MQVKVSARHG HLGDDIQSQL KEKGEKLLHF FNRLTMIEVT VDLHKTPSGK LKVEILATAE
61 HKHEFVATDE DGDVLTAFNK AVAHIKQQIT HYKEKIQDHR RDPDHGGNNL RGGQ
//