LOCUS VTR95285.1 316 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna polymerase sigma-70 family protein
: RNA polymerase sigma-70 factor OS=Gloeobacter violaceus
(strain PCC 7421) GN=gll0669 PE=4 SV=1: Sigma70_r2: Sigma70_r4_2
protein.
ACCESSION LR593886-4586
PROTEIN_ID VTR95285.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_24290"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|Q7NMU6|Q7NMU6_GLOVI ;
ALN/Q_length_ratio=0.883 ; DESCRIPTION=RNA polymerase
sigma-70 factor OS=Gloeobacter violaceus (strain PCC 7421)
GN=gll0669 PE=4 SV=1 ; EVALUE=6e-77 ;
Q/S_length_ratio=1.053"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|B0C6B2|B0C6B2_ACAM1 ;
ALN/Q_length_ratio=0.899 ; DESCRIPTION=RNA polymerase
sigma-24 subunit OS=Acaryochloris marina (strain MBIC
11017) GN=rpoE PE=4 SV=1 ; EVALUE=3e-75 ;
Q/S_length_ratio=1.033"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|B9XR86|B9XR86_PEDPL ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Pedosphaera parvula
(strain Ellin514) GN=Cflav_PD0734 PE=4 SV=1 ; EVALUE=1e-73
; Q/S_length_ratio=0.952"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|D1C9S1|D1C9S1_SPHTD ;
ALN/Q_length_ratio=0.873 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=Sthe_3164 PE=4
SV=1 ; EVALUE=6e-71 ; Q/S_length_ratio=1.029"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|W9VA60|W9VA60_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
subunit sigma-24 OS=Burkholderia pseudomallei MSHR6137
GN=T210_0109405 PE=4 SV=1 ; EVALUE=2e-70 ;
Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A0A0A4Q7U7|A0A0A4Q7U7_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei ABCPW 30 GN=X897_2298 PE=4 SV=1 ;
EVALUE=3e-70 ; Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A0A4M142|A0A0A4M142_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei MSHR4003 GN=X983_15 PE=4 SV=1 ; EVALUE=3e-70
; Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0A0A3PZY7|A0A0A3PZY7_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei MSHR4868 GN=X990_772 PE=4 SV=1 ; EVALUE=3e-70
; Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|A0A097WEK2|A0A097WEK2_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei MSHR2243 GN=Y044_684 PE=4 SV=1 ; EVALUE=3e-70
; Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A0A3MRG5|A0A0A3MRG5_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei ABCPW 107 GN=X945_4058 PE=4 SV=1 ;
EVALUE=3e-70 ; Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|A0A0A4F801|A0A0A4F801_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei MSHR465J GN=Y035_1734 PE=4 SV=1 ;
EVALUE=3e-70 ; Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A0A097XB75|A0A097XB75_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei MSHR62 GN=Y028_1957 PE=4 SV=1 ; EVALUE=3e-70
; Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A0A4RWA8|A0A0A4RWA8_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei MSHR4000 GN=X980_3053 PE=4 SV=1 ;
EVALUE=3e-70 ; Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|A0A0A4WJH8|A0A0A4WJH8_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei MSHR3458 GN=Y599_2779 PE=4 SV=1 ;
EVALUE=3e-70 ; Q/S_length_ratio=1.064"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A0A0A4LDF4|A0A0A4LDF4_BURPE ;
ALN/Q_length_ratio=0.889 ; DESCRIPTION=RNA polymerase
sigma-70 factor, family protein OS=Burkholderia
pseudomallei MSHR4012 GN=X985_98 PE=4 SV=1 ; EVALUE=3e-70
; Q/S_length_ratio=1.064"
/note="Pfam_scan:hit_1 (9..73); Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:1.9e-15; BITSCORE: 56.1"
/note="Pfam_scan:hit_2 (102..155);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:52; HMM_Length:54;
EVALUE:1.6e-12; BITSCORE: 46.6"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MSEQSTHSAE NLRPKLLAVA YRMLGTVADA EDAVQDAFLR YQQHAAEVES PEAWLVKTTT
61 RVCIDRLRKA KREEYVGQWL PEPVADSWVG ASDSTELADS LSMAFLVLLE TLSPTERATY
121 LLREVFGYEF DEIAELLDKS PVNVRQIAAR AKKRLDTRER RFDAAPERVS ELAERFFMAC
181 RSGDVGAIES MLTSDATLFS DGGGKTHAAP RPVIGTRRIA NLLAVVFRKL RQLGELAPAT
241 VNGAPGMVFT IAGRPVEVLT FAAREDRVDT LFVVLNPDKL SRWPSSPSAD DDGTYRPGPW
301 ERKRNGSSSE LPETRS
//