LOCUS VTR95163.1 195 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana rna sigma-24 ecf subfamily : RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=Dtur_0843 PE=4 SV=1: Sigma70_r2:
Sigma70_r4_2 protein.
ACCESSION LR593886-4464
PROTEIN_ID VTR95163.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_25510"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|B8E041|B8E041_DICTD ;
ALN/Q_length_ratio=0.928 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=Dtur_0843 PE=4 SV=1 ;
EVALUE=4e-26 ; Q/S_length_ratio=0.874"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|S0EYU5|S0EYU5_CHTCT ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Chthonomonas calidirosea
(strain DSM 23976 / ICMP 18418 / T49) GN=CCALI_01897 PE=4
SV=1 ; EVALUE=1e-24 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|F6CIM5|F6CIM5_DESK7 ;
ALN/Q_length_ratio=0.918 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Desulfotomaculum
kuznetsovii (strain DSM 6115 / VKM B-1805 / 17)
GN=Desku_0493 PE=4 SV=1 ; EVALUE=1e-23 ;
Q/S_length_ratio=0.985"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|Q1AXP8|Q1AXP8_RUBXD ;
ALN/Q_length_ratio=0.826 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rubrobacter xylanophilus (strain DSM 9941
/ NBRC 16129) GN=Rxyl_0863 PE=3 SV=1 ; EVALUE=1e-23 ;
Q/S_length_ratio=0.965"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|G2LEG1|G2LEG1_CHLTF ;
ALN/Q_length_ratio=0.923 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Chloracidobacterium
thermophilum (strain B) GN=Cabther_A0867 PE=4 SV=1 ;
EVALUE=8e-23 ; Q/S_length_ratio=0.819"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|S0EYM2|S0EYM2_CHTCT ;
ALN/Q_length_ratio=0.969 ; DESCRIPTION=RNA polymerase
sigma factor OS=Chthonomonas calidirosea (strain DSM 23976
/ ICMP 18418 / T49) GN=CCALI_01706 PE=3 SV=1 ;
EVALUE=1e-22 ; Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A0A023X0Q3|A0A023X0Q3_9ACTN ;
ALN/Q_length_ratio=0.851 ; DESCRIPTION=RNA polymerase
sigma factor OS=Rubrobacter radiotolerans GN=RradSPS_0759
PE=3 SV=1 ; EVALUE=3e-22 ; Q/S_length_ratio=0.911"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|Q67R63|Q67R63_SYMTH ;
ALN/Q_length_ratio=0.928 ; DESCRIPTION=RNA polymerase
ECF-type sigma factor OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=STH845 PE=4 SV=1 ; EVALUE=3e-22
; Q/S_length_ratio=0.938"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|D7CPT8|D7CPT8_SYNLT ;
ALN/Q_length_ratio=0.954 ; DESCRIPTION=RNA polymerase
sigma factor OS=Syntrophothermus lipocalidus (strain DSM
12680 / TGB-C1) GN=Slip_1965 PE=3 SV=1 ; EVALUE=4e-22 ;
Q/S_length_ratio=1.010"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|D1C7S5|D1C7S5_SPHTD ;
ALN/Q_length_ratio=0.938 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=Sthe_0470 PE=4
SV=1 ; EVALUE=6e-22 ; Q/S_length_ratio=1.000"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L8F653|L8F653_MYCSM ;
ALN/Q_length_ratio=0.851 ; DESCRIPTION=Extracytoplasmic
function alternative sigma factor OS=Mycobacterium
smegmatis MKD8 GN=sigE PE=4 SV=1 ; EVALUE=2e-21 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|E1IE08|E1IE08_9CHLR ;
ALN/Q_length_ratio=0.908 ; DESCRIPTION=Sigma-70 family RNA
polymerase sigma factor OS=Oscillochloris trichoides DG-6
GN=OSCT_1559 PE=4 SV=1 ; EVALUE=3e-21 ;
Q/S_length_ratio=1.016"
/note="BLAST_uniprot:hit_15 ; ACCESSION=A0R2D4 ;
ALN/Q_length_ratio=0.851 ; DESCRIPTION=ECF RNA polymerase
sigma factor SigE OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=sigE PE=1 SV=1 ; EVALUE=5e-21 ;
Q/S_length_ratio=0.759"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|A0A097LUW0|A0A097LUW0_MYCS2 ;
ALN/Q_length_ratio=0.851 ; DESCRIPTION=RNA polymerase
sigma factor SigE OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=LJ00_25085 PE=4 SV=1 ; EVALUE=5e-21
; Q/S_length_ratio=0.759"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|A0A097MDS4|A0A097MDS4_MYCSM ;
ALN/Q_length_ratio=0.851 ; DESCRIPTION=RNA polymerase
sigma factor SigE OS=Mycobacterium smegmatis GN=LI98_25095
PE=4 SV=1 ; EVALUE=5e-21 ; Q/S_length_ratio=0.759"
/note="Pfam_scan:hit_1 (25..96);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:69; HMM_Length:71;
EVALUE:1.1e-11; BITSCORE: 44.1"
/note="Pfam_scan:hit_2 (127..180);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:53; HMM_Length:54;
EVALUE:8.8e-10; BITSCORE: 37.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MGGGRTSEAD TALVARARTG DRAAFEELVR RMSRLVYARL YLDTGRADRA EDLVQETYLR
61 AFRAVHRLGD PAGFRPWLLA IAHNVLFDDA RQSGRLKRGP QPVGAHLGHV PSREPEPGAA
121 AERAELRQRV LAVLRLLPEE YRLPLTLRYI TGAGYDQIGE QLGLTNGSLR GRLFRGLKEL
181 RERLPLDFAA EFECR
//