LOCUS VTR95014.1 195 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana sigma-70 family rna polymerase sigma
factor : RNA polymerase sigma factor, sigma-70 family
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_5005 PE=4 SV=1: Sigma70_ECF
protein.
ACCESSION LR593886-4315
PROTEIN_ID VTR95014.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_27000"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|F0SIF8|F0SIF8_PLABD ;
ALN/Q_length_ratio=0.836 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_0926 PE=4 SV=1 ;
EVALUE=5e-28 ; Q/S_length_ratio=1.168"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|L0DID4|L0DID4_SINAD ;
ALN/Q_length_ratio=1.000 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_5005 PE=4 SV=1 ; EVALUE=5e-28 ;
Q/S_length_ratio=0.975"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|F0SLP7|F0SLP7_PLABD ;
ALN/Q_length_ratio=0.831 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Planctomyces
brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /
NBRC 103401 / IFAM 1448) GN=Plabr_1172 PE=4 SV=1 ;
EVALUE=5e-27 ; Q/S_length_ratio=1.005"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A3ZSI4|A3ZSI4_9PLAN ;
ALN/Q_length_ratio=0.826 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_14900 PE=4 SV=1 ; EVALUE=8e-25 ;
Q/S_length_ratio=0.929"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|F0SMW5|F0SMW5_PLABD ;
ALN/Q_length_ratio=0.974 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Planctomyces brasiliensis
(strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 /
IFAM 1448) GN=Plabr_2367 PE=4 SV=1 ; EVALUE=3e-24 ;
Q/S_length_ratio=0.933"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|A3ZX69|A3ZX69_9PLAN ;
ALN/Q_length_ratio=0.949 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_27758 PE=4 SV=1 ; EVALUE=5e-24 ;
Q/S_length_ratio=0.970"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|A3ZWH9|A3ZWH9_9PLAN ;
ALN/Q_length_ratio=0.826 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_26329 PE=4 SV=1 ; EVALUE=8e-23 ;
Q/S_length_ratio=0.965"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M5T5F6|M5T5F6_9PLAN ;
ALN/Q_length_ratio=0.836 ; DESCRIPTION=RNA polymerase
sigma-70 domain protein OS=Rhodopirellula sp. SWK7
GN=RRSWK_03146 PE=4 SV=1 ; EVALUE=4e-15 ;
Q/S_length_ratio=1.127"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|A3ZY49|A3ZY49_9PLAN ;
ALN/Q_length_ratio=0.851 ; DESCRIPTION=Uncharacterized
protein OS=Blastopirellula marina DSM 3645
GN=DSM3645_26594 PE=4 SV=1 ; EVALUE=2e-13 ;
Q/S_length_ratio=0.947"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|L0DGW7|L0DGW7_SINAD ;
ALN/Q_length_ratio=0.733 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4435 PE=4 SV=1 ; EVALUE=8e-10 ;
Q/S_length_ratio=0.907"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|F5LJN9|F5LJN9_9BACL ;
ALN/Q_length_ratio=0.728 ; DESCRIPTION=Sigma-70 region 2
OS=Paenibacillus sp. HGF7 GN=HMPREF9413_0364 PE=4 SV=1 ;
EVALUE=1e-07 ; Q/S_length_ratio=1.291"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|S3AB10|S3AB10_9BACL ;
ALN/Q_length_ratio=0.728 ; DESCRIPTION=Sigma-70 family RNA
polymerase sigma factor OS=Paenibacillus sp. HGH0039
GN=HMPREF1207_02869 PE=4 SV=1 ; EVALUE=1e-07 ;
Q/S_length_ratio=1.291"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|E5XS01|E5XS01_9ACTO ;
ALN/Q_length_ratio=0.841 ; DESCRIPTION=Sigma-70 family RNA
polymerase sigma factor OS=Segniliparus rugosus ATCC
BAA-974 GN=HMPREF9336_02273 PE=4 SV=1 ; EVALUE=1e-06 ;
Q/S_length_ratio=0.867"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|F2NMC5|F2NMC5_MARHT ;
ALN/Q_length_ratio=0.749 ; DESCRIPTION=RNA polymerase,
sigma-24 subunit, ECF subfamily OS=Marinithermus
hydrothermalis (strain DSM 14884 / JCM 11576 / T1)
GN=Marky_1071 PE=4 SV=1 ; EVALUE=3e-06 ;
Q/S_length_ratio=1.102"
/note="Pfam_scan:hit_1 (9..190);
Pfam:PF07638.6:Sigma70_ECF;
Pfam_type:Family;HMM_aln_Length:173; HMM_Length:185;
EVALUE:3.1e-13; BITSCORE: 49.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MADTTFDSIN LQDCLTRWRS GDREAADELL RATGKRLEKL ARRMTRSFPN VRAQADTGDV
61 LQNSTIRLLR SLRTMHPETT RDFFNLAAVH IRRELIDLAR RCRGKAWLPF DVPGDSHPPV
121 EPAADAPPDF DLWVRFHEAV DELPVEEREV VGLVFYHGWT QIRIAQLFQV DERTIRRRWS
181 RACERIREII GDDRV
//