LOCUS VTR94984.1 1110 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana wd-40 repeat : Uncultured bacterium
genome assembly Metasoil_fosmids_resub OS=uncultured bacterium
PE=4 SV=1: Sigma70_r2: Sigma70_r4_2: WD40: WD40 protein.
ACCESSION LR593886-4285
PROTEIN_ID VTR94984.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_27300"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|A0A090KPX2|A0A090KPX2_9BACT ;
ALN/Q_length_ratio=1.023 ; DESCRIPTION=Uncultured
bacterium genome assembly Metasoil_fosmids_resub
OS=uncultured bacterium PE=4 SV=1 ; EVALUE=1e-112 ;
Q/S_length_ratio=0.958"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|C7RS72|C7RS72_ACCPU ;
ALN/Q_length_ratio=0.523 ; DESCRIPTION=WD-40 repeat
protein OS=Accumulibacter phosphatis (strain UW-1)
GN=CAP2UW1_2609 PE=4 SV=1 ; EVALUE=5e-52 ;
Q/S_length_ratio=0.639"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|K9V395|K9V395_9CYAN ;
ALN/Q_length_ratio=0.492 ; DESCRIPTION=(Myosin
heavy-chain) kinase OS=Calothrix sp. PCC 6303
GN=Cal6303_2739 PE=4 SV=1 ; EVALUE=2e-49 ;
Q/S_length_ratio=0.696"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|B2IXC4|B2IXC4_NOSP7 ;
ALN/Q_length_ratio=0.486 ; DESCRIPTION=WD-40 repeat
protein OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=Npun_F1222 PE=4 SV=1 ; EVALUE=7e-47 ;
Q/S_length_ratio=0.916"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|A0YMI4|A0YMI4_LYNSP ;
ALN/Q_length_ratio=0.516 ; DESCRIPTION=WD-40 repeat
protein OS=Lyngbya sp. (strain PCC 8106) GN=L8106_17667
PE=4 SV=1 ; EVALUE=2e-43 ; Q/S_length_ratio=0.811"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|X0KUP7|X0KUP7_FUSOX ;
ALN/Q_length_ratio=0.514 ; DESCRIPTION=Uncharacterized
protein OS=Fusarium oxysporum f. sp. vasinfectum 25433
GN=FOTG_18972 PE=4 SV=1 ; EVALUE=4e-43 ;
Q/S_length_ratio=1.244"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|E0UJ20|E0UJ20_CYAP2 ;
ALN/Q_length_ratio=0.566 ; DESCRIPTION=WD40 repeat,
subgroup OS=Cyanothece sp. (strain PCC 7822)
GN=Cyan7822_2631 PE=4 SV=1 ; EVALUE=7e-41 ;
Q/S_length_ratio=0.874"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|L0DFV7|L0DFV7_SINAD ;
ALN/Q_length_ratio=0.177 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_3442 PE=4 SV=1 ; EVALUE=3e-40 ;
Q/S_length_ratio=0.905"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|L0DM90|L0DM90_SINAD ;
ALN/Q_length_ratio=0.260 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_6419 PE=4 SV=1 ; EVALUE=3e-40 ;
Q/S_length_ratio=1.808"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|D7BXH8|D7BXH8_STRBB ;
ALN/Q_length_ratio=0.556 ; DESCRIPTION=Putative WD-40
repeat protein OS=Streptomyces bingchenggensis (strain
BCW-1) GN=SBI_04631 PE=4 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=0.858"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|L0DKD8|L0DKD8_SINAD ;
ALN/Q_length_ratio=0.259 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_4965 PE=4 SV=1 ; EVALUE=1e-39 ;
Q/S_length_ratio=1.243"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|L0DDR3|L0DDR3_SINAD ;
ALN/Q_length_ratio=0.226 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_2497 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=1.007"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|L0D9E1|L0D9E1_SINAD ;
ALN/Q_length_ratio=0.186 ; DESCRIPTION=RNA polymerase
sigma factor, sigma-70 family OS=Singulisphaera acidiphila
(strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10)
GN=Sinac_0869 PE=4 SV=1 ; EVALUE=3e-39 ;
Q/S_length_ratio=2.303"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|K9QMP1|K9QMP1_NOSS7 ;
ALN/Q_length_ratio=0.476 ; DESCRIPTION=WD40
repeat-containing protein OS=Nostoc sp. (strain ATCC 29411
/ PCC 7524) GN=Nos7524_0419 PE=4 SV=1 ; EVALUE=4e-39 ;
Q/S_length_ratio=0.610"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|A0EB01|A0EB01_PARTE ;
ALN/Q_length_ratio=0.527 ; DESCRIPTION=Chromosome
undetermined scaffold_87, whole genome shotgun sequence
OS=Paramecium tetraurelia GN=GSPATT00025202001 PE=4 SV=1 ;
EVALUE=1e-38 ; Q/S_length_ratio=1.510"
/note="Pfam_scan:hit_1 (44..114);
Pfam:PF04542.9:Sigma70_r2;
Pfam_type:Domain;HMM_aln_Length:67; HMM_Length:71;
EVALUE:9.8e-10; BITSCORE: 37.9"
/note="Pfam_scan:hit_2 (136..188);
Pfam:PF08281.7:Sigma70_r4_2;
Pfam_type:Domain;HMM_aln_Length:50; HMM_Length:54;
EVALUE:8.9e-09; BITSCORE: 34.6"
/note="Pfam_scan:hit_3 (859..887); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:22; HMM_Length:39;
EVALUE:0.0023; BITSCORE: 17.7"
/note="Pfam_scan:hit_4 (891..929); Pfam:PF00400.27:WD40;
Pfam_type:Repeat;HMM_aln_Length:34; HMM_Length:39;
EVALUE:3.6e-07; BITSCORE: 29.8"
/note="GO_domain:GO:0003677"
/note="GO_domain:GO:0001071"
/note="GO_domain:GO:0000988"
/note="GO_domain:GO:0034641"
/note="GO_domain:GO:0009058"
/note="GO_domain:GO:0043234"
/note="GO_domain:GO:0005622"
BEGIN
1 MGRAPDLLTR LFRRATDRRG AEATTAELLG RFVATRDEEA FRALVDRHGP MVWGVCSRVL
61 RQPQDIEDAF QATFIVLARR AAIVRPPELL PAWLHGVARR SALRVMRISA RRREVQVSTM
121 PNPAAAMIND LLDLPAVLDE ELGRLPSKLR QAVVLCHLQS RTYSDAAREM KCSIAAVAKR
181 LDRAAERLRG RLARRGLAPI GCTAWGLLAG APEALAVPAD VAARTTAAAL GTVTGAAATG
241 VAAATAREVA TTVTRVPLRI LATAVAVLIA GAGLAVVQRA AAPPVPKPVV AQSTEAVRLD
301 RFGDPLPAGA VARLGTVRFR TGKAPCPGGV GFLADGKTLV SAHESGTIVF WDATTGKETD
361 RIDGPPGAVS LVVSADGRRM VAVGTEMWAW DITPNGVKSL WKTPGSSKGE LVATAALSPN
421 GKVLAYGSRT GGQLIDADTG DLLQPLAVKA TRVMAFSADG RALVVAGDGP VLLLDPATGK
481 EQRRFDPKGS LTQLAVAPDG ARVAAITGQM IRIWDAASGR ELAGVPSAGN SSAALFFAPD
541 GRTLLEAGGE RIRYRDPGTG KESRPAVNAP HLQPHQSSFL FFYYNPVVPA VSPDGKRVAV
601 IVGGGAVGVW RTDTGAEVGP SGGPHGEVTA LAFTPNGNEI LTAAAPDHFQ AWNPATGAPG
661 RRLATPAPGM TTRSLVVAPS GEVEAICAQT QFGGFRHLPG IVEWGARATG PGVDRHRVPA
721 EVTKSKVWSP VTAAESADGR RVIWGTGTVL IVTDRATGAE VRRVDTKVAV TGVTVSADGE
781 TAAAFASKEG VVSVWDLGAA RERMRVSARL NQSASCAPLA LSADGRWLAG VEGGPKGAQA
841 VQLWEVASNR VGPRFPVGAA AVLPLTFSPN GRLLAGGGRE GKIRVWDLAT GTEARQYTGH
901 RGPVQALEFA PNGERLASGS TDATALVWDT RPLLAWPPLP ARSWEATDAQ WAGLGKDDPS
961 QAVRTVWALV AAGDDAVPFL RTRLLRRPPP PSAERVTAVI KQLGSEEFAE RERATDELAG
1021 LGIGAELALR AARTTDNPEI RARLDRLLAR LAPTRAPELL AAVRGIAALE RIGTPAAADA
1081 LKEITAGRGH AVVTAEAEAA VRRVAARPKP
//