LOCUS VTR94980.1 409 aa PRT BCT 03-FEB-2020
DEFINITION Gemmata massiliana ribonuclease d : Ribonuclease D OS=
Planctomyces limnophilus (strain ATCC 43296 / DSM 3776
/ IFAM 1008 / 290) GN=Plim_0672 PE=4 SV=1: DNA_pol_A_exo1:
HRDC protein.
ACCESSION LR593886-4281
PROTEIN_ID VTR94980.1
SOURCE Gemmata massiliana
ORGANISM Gemmata massiliana
Bacteria; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae;
Gemmata.
REFERENCE 1
AUTHORS
CONSRTM Science for Life Laboratories
JOURNAL Submitted (14-MAY-2019) to the INSDC. DEPARTMENT OF CELL AND
MOLECULAR BIOLOGY, Uppsala University, Molecular Evolution,
Biomedicinskt centrum (BMC), Husargatan 3, 752 37 Uppsala, Sweden
FEATURES Qualifiers
source /organism="Gemmata massiliana"
/chromosome="1"
/isolate="Soil9"
/mol_type="genomic DNA"
/isolation_source="soil"
/db_xref="taxon:1210884"
protein /locus_tag="SOIL9_27340"
/note="BLAST_uniprot:hit_1 ;
ACCESSION=tr|D5SR51|D5SR51_PLAL2 ;
ALN/Q_length_ratio=0.951 ; DESCRIPTION=Ribonuclease D
OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776
/ IFAM 1008 / 290) GN=Plim_0672 PE=4 SV=1 ; EVALUE=1e-90 ;
Q/S_length_ratio=0.967"
/note="BLAST_uniprot:hit_2 ;
ACCESSION=tr|L0D8M5|L0D8M5_SINAD ;
ALN/Q_length_ratio=0.966 ; DESCRIPTION=Ribonuclease D
OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM
18658 / VKM B-2454 / MOB10) GN=Sinac_1196 PE=4 SV=1 ;
EVALUE=3e-90 ; Q/S_length_ratio=1.017"
/note="BLAST_uniprot:hit_3 ;
ACCESSION=tr|E8R2M6|E8R2M6_ISOPI ;
ALN/Q_length_ratio=0.954 ; DESCRIPTION=Ribonuclease D
OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 /
IS1B) GN=Isop_1946 PE=4 SV=1 ; EVALUE=2e-87 ;
Q/S_length_ratio=1.033"
/note="BLAST_uniprot:hit_4 ;
ACCESSION=tr|A3ZQI0|A3ZQI0_9PLAN ;
ALN/Q_length_ratio=0.934 ; DESCRIPTION=Ribonuclease D
OS=Blastopirellula marina DSM 3645 GN=DSM3645_23731 PE=4
SV=1 ; EVALUE=4e-87 ; Q/S_length_ratio=1.043"
/note="BLAST_uniprot:hit_5 ;
ACCESSION=tr|K5DNN3|K5DNN3_RHOBT ;
ALN/Q_length_ratio=0.976 ; DESCRIPTION=Ribonuclease D
OS=Rhodopirellula baltica SH28 GN=RBSH_00520 PE=4 SV=1 ;
EVALUE=2e-82 ; Q/S_length_ratio=0.945"
/note="BLAST_uniprot:hit_7 ;
ACCESSION=tr|F2B1J6|F2B1J6_RHOBT ;
ALN/Q_length_ratio=0.968 ; DESCRIPTION=Ribonuclease D
OS=Rhodopirellula baltica WH47 GN=RBWH47_02697 PE=4 SV=1 ;
EVALUE=2e-82 ; Q/S_length_ratio=0.945"
/note="BLAST_uniprot:hit_6 ;
ACCESSION=tr|L7CHV1|L7CHV1_RHOBT ;
ALN/Q_length_ratio=0.968 ; DESCRIPTION=Ribonuclease D
OS=Rhodopirellula baltica SWK14 GN=RBSWK_02475 PE=4 SV=1 ;
EVALUE=2e-82 ; Q/S_length_ratio=0.945"
/note="BLAST_uniprot:hit_8 ;
ACCESSION=tr|M2AWJ4|M2AWJ4_9PLAN ;
ALN/Q_length_ratio=0.976 ; DESCRIPTION=Ribonuclease D
OS=Rhodopirellula europaea 6C GN=RE6C_05310 PE=4 SV=1 ;
EVALUE=4e-82 ; Q/S_length_ratio=1.012"
/note="BLAST_uniprot:hit_9 ;
ACCESSION=tr|M5RI16|M5RI16_9PLAN ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=Ribonuclease D
OS=Rhodopirellula maiorica SM1 GN=RMSM_04134 PE=4 SV=1 ;
EVALUE=7e-82 ; Q/S_length_ratio=1.041"
/note="BLAST_uniprot:hit_10 ;
ACCESSION=tr|Q7URG3|Q7URG3_RHOBA ;
ALN/Q_length_ratio=0.968 ; DESCRIPTION=Ribonuclease D
OS=Rhodopirellula baltica (strain SH1) GN=rnd PE=4 SV=1 ;
EVALUE=1e-81 ; Q/S_length_ratio=0.830"
/note="BLAST_uniprot:hit_11 ;
ACCESSION=tr|M5S8L1|M5S8L1_9PLAN ;
ALN/Q_length_ratio=0.976 ; DESCRIPTION=Ribonuclease D
OS=Rhodopirellula europaea SH398 GN=RESH_01652 PE=4 SV=1 ;
EVALUE=4e-81 ; Q/S_length_ratio=1.012"
/note="BLAST_uniprot:hit_12 ;
ACCESSION=tr|A6C450|A6C450_9PLAN ;
ALN/Q_length_ratio=0.954 ; DESCRIPTION=Ribonuclease D
OS=Planctomyces maris DSM 8797 GN=PM8797T_11329 PE=4 SV=1
; EVALUE=2e-80 ; Q/S_length_ratio=1.035"
/note="BLAST_uniprot:hit_13 ;
ACCESSION=tr|D2QXT8|D2QXT8_PIRSD ;
ALN/Q_length_ratio=0.929 ; DESCRIPTION=3'-5' exonuclease
OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB
4128) GN=Psta_3351 PE=4 SV=1 ; EVALUE=2e-79 ;
Q/S_length_ratio=1.025"
/note="BLAST_uniprot:hit_14 ;
ACCESSION=tr|M5TU94|M5TU94_9PLAN ;
ALN/Q_length_ratio=0.946 ; DESCRIPTION=Ribonuclease D
OS=Rhodopirellula sallentina SM41 GN=RSSM_05843 PE=4 SV=1
; EVALUE=2e-76 ; Q/S_length_ratio=1.035"
/note="BLAST_uniprot:hit_15 ;
ACCESSION=tr|F0SS60|F0SS60_PLABD ;
ALN/Q_length_ratio=0.954 ; DESCRIPTION=Ribonuclease D
OS=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305
/ JCM 21570 / NBRC 103401 / IFAM 1448) GN=Plabr_0444 PE=4
SV=1 ; EVALUE=8e-69 ; Q/S_length_ratio=1.020"
/note="Pfam_scan:hit_1 (14..181);
Pfam:PF01612.15:DNA_pol_A_exo1;
Pfam_type:Domain;HMM_aln_Length:171; HMM_Length:176;
EVALUE:4e-32; BITSCORE: 111.0"
/note="Pfam_scan:hit_2 (223..288); Pfam:PF00570.18:HRDC;
Pfam_type:Domain;HMM_aln_Length:56; HMM_Length:68;
EVALUE:9.1e-12; BITSCORE: 44.5"
/note="GO_domain:GO:0004518"
/note="GO_domain:GO:0005622"
/note="Enzyme_Code:EC:3.1"
BEGIN
1 MPRRPAKRPA LPEQLVTHPA QLAACLAHLA DMPLIGFDTE FVGEDAYRPE LCLVQVSTAE
61 QLFVIDPFEC GPLDEFWQIL LDPERTVVVH AGREDVRMCY FQAGSAPPNV FDVQIAAGLV
121 GMTYPIGYAG LVHDLLHQRM QKGETLTDWR KRPLTPAQVR YAYDDVRYLL PAHRKLTERL
181 KRYKRLEWAE EEFATAVRKA VADDVTVERW RKIKGIGALD RRALAVAREV YGWRDKFAEK
241 LNRPPRFLMR DDLLIEIARR APTKADELHA VRGLPRGQEE AILDAIRRAK ALPPEECPEP
301 ETRDNDTSNV VLLGNLLNVV LADFAGRNRL AANLVSSGAD LKAIVRSRAA GEPLPDVALC
361 RGWRAKAVLP ELLAILSGDT AIRVADPKAA EPLELVELEP EDEEEQDEE
//